DRSC/TRiP Functional Genomics Resources

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Protein Alignment TER94 and Nvl

DIOPT Version :10

Sequence 1:NP_001097249.1 Gene:TER94 / 36040 FlyBaseID:FBgn0286784 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_001099450.1 Gene:Nvl / 289323 RGDID:1311270 Length:855 Species:Rattus norvegicus


Alignment Length:625 Identity:260/625 - (41%)
Similarity:375/625 - (60%) Gaps:68/625 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   212 KREEEEESLNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLI 276
            |.:..|..:::|.::|:||....|.::.:|: :.:|||.:::.:||.||||:|::||||.||||:
  Rat   250 KAKSTELQISSVKFEDVGGNDATLKEVCKML-IHMRHPEVYQHLGVVPPRGVLLHGPPGCGKTLL 313

  Fly   277 ARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGE 341
            |.|:|.|.......:..|||:|.::||||..||..|::|..|:|.|:||||||||.|||:....:
  Rat   314 AHAIAGELDLPILKVAAPEIVSGVSGESEQKLRDLFDQAVSNAPCIVFIDEIDAITPKREVASKD 378

  Fly   342 VERRIVSQLLTLMDGMKK---SSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVL 403
            :|||||:||||.||.:..   ::.::|:.|||||:|:||||||.||||||:.:||||...|..:|
  Rat   379 MERRIVAQLLTCMDDLNNVAATARVLVVGATNRPDSLDPALRRAGRFDREVCLGIPDEASRERIL 443

  Fly   404 RIHTKNMKLHDDVDLEQIAAESHGHVGADLASLCSEAAL-----------QQIR----------- 446
            :...:.::|.:..:...:|..:.|.|||||.:||.|||:           :|.|           
  Rat   444 QTLCRKLRLPETFNFSHLAHLTPGFVGADLMALCREAAVCAVHRVLMRRQEQQRTEPETGGLPSD 508

  Fly   447 -----------------EKMDLIDL--EDDKIDAEVLASLAVTMENFRYAMTKSSPSALRETVVE 492
                             |...|:.|  :.|.|..|.:..|.:.:.:|..|:::..|||.||..|.
  Rat   509 GEQGRSLGAEPPSETQDELQRLLGLLRDQDPISEEQMQGLCLELNDFIVALSEVQPSAKREGFVT 573

  Fly   493 VPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC 557
            |||.||.|:|.||.:::||...:..||.:|::|...|:....|||..|||||||||||||:|||.
  Rat   574 VPNVTWADVGALEDIREELTMAILAPVRNPEQFRALGLVAPAGVLLAGPPGCGKTLLAKAVANES 638

  Fly   558 QANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCVLFFDELDSIAKARGGNVGDAGGAADRV 622
            ..|||||||||||.|:.||||..||.:|.:|:::||||:||||:|::...|...   ..||:.||
  Rat   639 GLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR---ETGASVRV 700

  Fly   623 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAILKA---NLR 684
            :||:||||||:..::.|||:.|||||||||||||||||||:.:::.||....|.||||.   |..
  Rat   701 VNQLLTEMDGLETRQQVFILAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGT 765

  Fly   685 KSPLAKEVDLTYIAK--VTQGFSGADLTEICQRACKLAIRQAIEAEIRREKERAENQNSAMDMDE 747
            |.||.::|||..||.  ....::||||:.:.:.|...|:||.|..:        :|.....::  
  Rat   766 KPPLDEDVDLEAIANDHRCDCYTGADLSALVREASLCALRQEITGQ--------KNGIGTAEL-- 820

  Fly   748 DDPVPEITSAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ 787
                 .::..|||||.:..:.|:|..|.|.||...::|.|
  Rat   821 -----TVSHKHFEEAFRKVKPSISVKDQRMYEALQRSLSQ 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TER94NP_001097249.1 CDC48 47..787 CDD:273521 259/623 (42%)
NvlNP_001099450.1 Nucleolin_bd 2..71 CDD:465247
CDC48 <255..855 CDD:273521 258/618 (42%)
Blue background indicates that the domain is not in the aligned region.

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