DRSC/TRiP Functional Genomics Resources

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Protein Alignment TER94 and pch-2

DIOPT Version :9

Sequence 1:NP_001097249.1 Gene:TER94 / 36040 FlyBaseID:FBgn0286784 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_495711.1 Gene:pch-2 / 174313 WormBaseID:WBGene00008641 Length:424 Species:Caenorhabditis elegans


Alignment Length:409 Identity:85/409 - (20%)
Similarity:164/409 - (40%) Gaps:94/409 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   359 KSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIHTKNMKLHDDVDLEQIAA 423
            |:.|..:......|.|  ...:||..|:..|.....:|           :|.|....|:|.|   
 Worm     9 KNIHAEIRICQKFPKS--TVQKRFSEFEELIKAASKNA-----------RNWKPISSVELFQ--- 57

  Fly   424 ESHGHVGADLASLCSEAALQQIREKMDL--IDLEDDKIDAEVLASLAVTMENFR-YAMTKSSP-- 483
                          .:::|.::.||:.:  .:|.|.:: .|.:..|.:...|.. |.:.|..|  
 Worm    58 --------------GDSSLNELFEKLVIGTCELRDGEL-FENVNDLTINPSNIHVYKLHKDGPLS 107

  Fly   484 ----------SALRETVVEVP----NTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFG-MQPS 533
                      |.:...:.::|    ::.|.::....::|.|:...|.......:|.:... :..:
 Worm   108 QNIGDDDGDESIIGSQLWQLPCVEFDSIWENLIYDSNLKNEVMSYVAALARLSEKHVNTKIINVN 172

  Fly   534 RGVLFYGPPGCGKTLLAKAIANE---------CQANFISVKGPELLTMWFGESEANVRDIFDKAR 589
            |.:|..||||.|||.|.|.:|..         .::..:.:....|.:.||.||...|:.:||:..
 Worm   173 RLILLTGPPGTGKTSLCKGLAQHLSIRMNDKYSKSVMLEINSHSLFSKWFSESGKLVQKMFDQID 237

  Fly   590 SAA---PCVLF--FDELDSIAKARGGNVGDAGGA-ADRVINQILTEMDGMGAKKNVFIIGATNRP 648
            ..|   .|::|  .||::|:...|..:...:..: |.|.:|.:||::|.:..:.||.|:..:|..
 Worm   238 ELAEDEKCMVFVLIDEVESLGMCRESSSSRSEPSDAIRAVNALLTQIDRIRRRDNVLILCTSNLE 302

  Fly   649 DIIDPAILRPGRLDQLIYIPLPDDKSREAILKANL-------------------------RKSPL 688
            ..:|.|::  .|.|.:..:..|.|.:|.::||:::                         .|:|.
 Worm   303 STLDKALV--DRADIVKNVGQPSDFARYSMLKSSIMELARIGVVIDNEVHTDYWPQDICDTKAPR 365

  Fly   689 AKEVDLTY-IAKVTQGFSG 706
            .:..::.: ||:..:|.||
 Worm   366 NEFTEILFKIAQEARGLSG 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TER94NP_001097249.1 CDC48 47..787 CDD:273521 85/409 (21%)
CDC48_N 47..129 CDD:280513
CDC48_2 153..213 CDD:215011
AAA 263..392 CDD:278434 8/32 (25%)
AAA 536..669 CDD:278434 40/147 (27%)
Vps4_C <741..783 CDD:286426
pch-2NP_495711.1 AAA 172..322 CDD:214640 41/151 (27%)
AAA 175..320 CDD:278434 40/146 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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