DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment eve and pdx1

DIOPT Version :10

Sequence 1:NP_523670.2 Gene:eve / 36039 FlyBaseID:FBgn0000606 Length:376 Species:Drosophila melanogaster
Sequence 2:XP_002934065.1 Gene:pdx1 / 100490648 XenbaseID:XB-GENE-483331 Length:271 Species:Xenopus tropicalis


Alignment Length:195 Identity:69/195 - (35%)
Similarity:89/195 - (45%) Gaps:35/195 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 HHAHHDA--SPVDQKPLVVDL-LATQYGKPQTPPPSPNECLSSPDNSLNG--SRGSEIPADPSVR 71
            ||.||..  .|..|.|...|. .||...:.:|..|.| ...|:..::..|  :.||.|......:
 Frog    85 HHHHHPGIPHPHQQMPFPDDTESATLEERNRTLLPFP-WMKSTKSHTWKGQWTGGSYIMEQEENK 148

  Fly    72 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMK-----DKRQRIA 131
            |.|||:||.||..|||||....|:|||||.|||..|||.|..||:||||||||     ||::...
 Frog   149 RTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKKRGRG 213

  Fly   132 VAWPYAAVYSDP-----AFAASIL----QAAANSVGMPYPPYAPAAAAAAAAAAAVATNPMMATG 187
                     |||     ..:|.::    |...||..      ......::|...:..:||:.|||
 Frog   214 ---------SDPEQDSVVSSADVIKDEPQCLGNSQN------TGDLVRSSALPTSPQSNPIPATG 263

  Fly   188  187
             Frog   264  263

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eveNP_523670.2 Homeodomain 71..127 CDD:459649 37/60 (62%)
pdx1XP_002934065.1 Homeodomain 148..204 CDD:459649 36/55 (65%)

Return to query results.
Submit another query.