DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pal1 and Pal2

DIOPT Version :9

Sequence 1:NP_001137630.2 Gene:Pal1 / 36033 FlyBaseID:FBgn0283510 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001286776.1 Gene:Pal2 / 37746 FlyBaseID:FBgn0262728 Length:406 Species:Drosophila melanogaster


Alignment Length:433 Identity:158/433 - (36%)
Similarity:218/433 - (50%) Gaps:68/433 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LLLHLLLCIR----PAVSQTQSPQRYLHNVDSNSNNNER----LHQILKGSGAGSGATQLNWPQP 76
            ||...||.|.    .:.|....|.....::....|.|||    :..::|......|..:   |:.
  Fly     4 LLFVALLAISLGYVASSSSNHLPAGLAMDLGPGVNLNERFFDQVRALIKRRLQEKGLAK---PEQ 65

  Fly    77 PKQTVPNVKTELAKLNNTYVYQNA---------------WPANNVKLGAVTAVSFDKAGNVVIFH 126
            |:..:|....:...|.|...|.|.               ||......|.||||:.|..|:.|:||
  Fly    66 PELAMPLTDDDAVALQNQRSYDNVPLPAASVPTPVLVENWPTEQHSFGQVTAVAVDPQGSPVVFH 130

  Fly   127 RVNRVWGQTTFDNRNQYQEKYRGPIRESTILALEPATGKVQYDWGKNFFYMPHGLTVDPEDNVWL 191
            |..|.|...||:..|.|.....|||:|:||..|:..||.::..||.|.||||||||:|...|.|:
  Fly   131 RAERYWDVNTFNESNIYYLIEYGPIKENTIYVLDAKTGAIKSGWGSNMFYMPHGLTIDLHGNYWI 195

  Fly   192 TDVAMHQVFKFPPRGGDGKPALTLGDAFQPGSGRK-FCKPTSVAVLDNGDFFVADGYCNARILKY 255
            |||||||.|||.|  ...||.||:|..|:|||..| .|||||:||...|:||:||||||:||||:
  Fly   196 TDVAMHQAFKFKP--FSNKPLLTIGKRFRPGSSVKHLCKPTSIAVATTGEFFIADGYCNSRILKF 258

  Fly   256 SRKGELILFWGQNTFSGISYDVAPQNFFA--IPHALTLVPELQLLCAADRENGRVQC----FLSS 314
            :..|:|:....|           |..|.:  :|||:||:..|.|||.|||||.||.|    .:||
  Fly   259 NAAGKLLRTIPQ-----------PPEFLSLQVPHAITLLEHLDLLCIADRENMRVVCPKAGLISS 312

  Fly   315 NGTFH--SQYHNQLIGDRLFSMAYTPAAGGQLVIVNGPTAELGIHPEHYNEVHGFVLSMRSKQLV 377
            :|...  :......:| |:|.:|   :.|..:..|||||:.|        .|.||.:..||:.::
  Fly   313 HGEGEPAATIQEPDLG-RVFGVA---SFGDIVFAVNGPTSML--------PVRGFTIDPRSETII 365

  Fly   378 SKFGPNNLQFQNPHDVAVTADGNEIYVAEL----NPMRIHKFV 416
            ..:|    :|:|||.:||:.:|:.:||.|:    ...|:.|:|
  Fly   366 GHWG----EFKNPHSMAVSVNGSALYVTEIGTNHQTNRVWKYV 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pal1NP_001137630.2 NHL_PAL_like 97..416 CDD:271328 139/346 (40%)
NHL repeat 111..172 CDD:271328 26/60 (43%)
NHL repeat 178..220 CDD:271328 24/41 (59%)
NHL repeat 230..267 CDD:271328 20/36 (56%)
NHL repeat 283..321 CDD:271328 20/45 (44%)
NHL repeat 330..382 CDD:271328 15/51 (29%)
NHL repeat 388..415 CDD:271328 10/30 (33%)
Pal2NP_001286776.1 NHL_PAL_like 102..404 CDD:271328 137/330 (42%)
NHL repeat 115..176 CDD:271328 26/60 (43%)
NHL repeat 182..222 CDD:271328 24/41 (59%)
NHL repeat 233..270 CDD:271328 20/36 (56%)
NHL repeat 277..321 CDD:271328 20/43 (47%)
NHL repeat 329..369 CDD:271328 15/50 (30%)
NHL repeat 372..403 CDD:271328 10/30 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447729
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 199 1.000 Inparanoid score I2481
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D224754at33208
OrthoFinder 1 1.000 - - FOG0002923
OrthoInspector 1 1.000 - - otm43248
orthoMCL 1 0.900 - - OOG6_105407
Panther 1 1.100 - - P PTHR10680
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
87.900

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