Protein Alignment Pal1 and Nhlrc3

DIOPT Version :10

• Sequence 1: NP_610537.2
• Gene: Pal1 / 36033
• FlyBaseID: FBgn0283510
• Length: 541
• Species: Drosophila melanogaster
• Sequence 2: XP_008759239.3
• Gene: Nhlrc3 / 310416
• RGDID: 1565414
• Length: 368
• Species: Rattus norvegicus
• Alignment Length: 434
• Identity: 96/434 - (22%)
• Similarity: 154/434 - (35%)
• Gaps: 130/434 - (29%)

  Fly     9 CLGSKSLAICCLLLHLLLCIRPAVSQTQSPQRYLHNVDSNSNNNERLHQILKGSGAGSGATQLNW 73
            ||......:.||:||...| ...||:|.|                 .|              ::|
  Rat    28 CLAGAVFFLSCLVLHSRFC-GSLVSRTFS-----------------FH--------------ISW 60

  Fly    74 PQPPKQTVPNVKTELAKLNNTYVYQNAWPANNVKL-GAVTAVSFDKA-GNVVIFHRVNRVWGQTT 136
                :...|..:.:|           .||.|:... ||...|:.|.. |.|.:..|.:.:.....
  Rat    61 ----RMEDPLFRLDL-----------GWPKNSEYFTGATFCVAVDSLNGLVYVAQRGDDIPKVLV 110

  Fly   137 FDNRNQYQEKYRGPIRESTILALEPATGKVQYDWGKNFFYMPHGLTVDP---EDNVWLTDVAMHQ 198
            |.....:...:...:.                        .|||:.|..   |.:||:|||..
  Rat   111 FSEDGYFLRAWNYTVD------------------------TPHGMFVSGTPYEQSVWITDVGS-- 149

  Fly   199 VFKFPPRGGDGKPALTLGDAFQ----PG------SGRKFCKPTSVAVLDNGDFFV--ADGYCNAR 251
                .|.|...|...:|||..|    ||      :..:|..|..:.|.|.|:.::  .||..|.|
  Rat   150 ----GPYGHTVKKYNSLGDLVQVLGTPGKKGTGLNPLQFDNPAELYVDDTGEIYIVDGDGGLNNR 210

  Fly   252 ILKYSRKGELILFW--GQNTFSGISYDVAPQNFFAIPHALTLVPELQLLCAADRENGRVQCFLSS 314
            ::|.|:  :.::.|  |:|       ...|.. |.|||::|| ..:..:..|||.|.|:|.|...
  Rat   211 LVKLSQ--DFMILWLRGEN-------GTGPAK-FNIPHSVTL-DSVGRVWVADRGNKRLQVFDKD 264

  Fly   315 NGTFHSQYHNQLIGDRLFSMAYTPAAGGQLVIVNGPTAELGIHPEHYNEVHGFVLSMRSKQLVSK 379
            .|.:...:.|....:...::.:||  .|:.:||    |:|.:..          ||:.:......
  Rat   265 TGEWLGAWDNCFTEEGPSAVRFTP--DGRYLIV----AQLNLSR----------LSLLAAPPSGS 313

  Fly   380 FGP----NNLQFQN---PHDVAVTADGNEIYVAELNPMRIHKFV 416
            .|.    :.:|..:   ||.:.|......:||||:...:|.|:|
  Rat   314 IGDCTVVSTIQLADEVLPHLLEVDRKTGAVYVAEIGAKQIQKYV 357

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pal1	NP_610537.2	NHL_PAL_like	97..416	CDD:271328	80/344 (23%)
		NHL repeat	111..172	CDD:271328	6/61 (10%)
		NHL repeat	178..220	CDD:271328	16/44 (36%)
		NHL repeat	230..267	CDD:271328	11/40 (28%)
		NHL repeat	283..321	CDD:271328	14/37 (38%)
		NHL repeat	330..382	CDD:271328	9/51 (18%)
		NHL repeat	388..415	CDD:271328	8/29 (28%)
Nhlrc3	XP_008759239.3	None