DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pal1 and pamn-1

DIOPT Version :10

Sequence 1:NP_610537.2 Gene:Pal1 / 36033 FlyBaseID:FBgn0283510 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001367424.1 Gene:pamn-1 / 266833 WormBaseID:WBGene00020556 Length:663 Species:Caenorhabditis elegans


Alignment Length:327 Identity:98/327 - (29%)
Similarity:156/327 - (47%) Gaps:43/327 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 VYQNAWPANNVKLGAVTAVSFDKAGNVVIFHRVNRVWGQTTFDNRNQYQEKYRGPIRESTILALE 160
            :::|   ...||||.|..::|:....:::|.|..|||..:||||.|...:|  .||.:..||.:.
 Worm   348 IHEN---LGGVKLGQVAGLAFNNEQQLLVFQRAGRVWDASTFDNYNILLDK--KPIADPVILVIS 407

  Fly   161 PATG--KVQYDWGKNFFYMPHGLTVDPEDNVWLTDVAMHQVFKFPPRGGDGKPALTLGDAFQPGS 223
            .:..  |::...|...||:|||:.||.:..|:.|||..|.|.|:...|.:.|...|.|:...|||
 Worm   408 YSGNQTKLERKLGGGQFYLPHGIYVDKDGFVYTTDVGSHTVAKWKIEGNELKNIWTSGELLMPGS 472

  Fly   224 GR-KFCKPTSVAVLDNGDFFVADGYCNARILKYSRKGELILFWGQNTFSGISYDVAPQNFFAIPH 287
            .: .:||||.:..::: ..:|.|||||:|::.....|:.|..:      |:..:.|.|  |.:||
 Worm   473 DQHHYCKPTGITRVED-QLYVTDGYCNSRVVVLDLNGKRIRQF------GLPGEDAGQ--FNLPH 528

  Fly   288 ALTLVPELQLLCAADRENGRVQCFLSSNGTFHSQYHNQLIGDRLFSMAYTPAAGGQLV-IVNGPT 351
            .:......:|| ..|||||||| .:::.|....::.:     .:|:..|:.|:....| :|.|  
 Worm   529 DIVSDSAGRLL-VTDRENGRVQ-HMTTQGHVIEEFKS-----TMFTNIYSAASHEDYVFMVPG-- 584

  Fly   352 AELGIHPEHYNEVHG---FVLSMRSKQLVSKFGPNNL--------QFQNPHDVAVTADGNEIYVA 405
                 .|...:|..|   ||....:..:...|||...        ||..||.:.|..||..|:|.
 Worm   585 -----RPIMGHETEGIAVFVGRSGTGLIEYAFGPTTKGKREQMGPQFGQPHCLRVCPDGGHIFVG 644

  Fly   406 EL 407
            ::
 Worm   645 DI 646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pal1NP_610537.2 NHL_PAL_like 97..416 CDD:271328 98/326 (30%)
NHL repeat 111..172 CDD:271328 18/62 (29%)
NHL repeat 178..220 CDD:271328 16/41 (39%)
NHL repeat 230..267 CDD:271328 11/36 (31%)
NHL repeat 283..321 CDD:271328 14/37 (38%)
NHL repeat 330..382 CDD:271328 12/55 (22%)
NHL repeat 388..415 CDD:271328 7/20 (35%)
pamn-1NP_001367424.1 Cu2_monooxygen <61..146 CDD:460053
Cu2_monoox_C 168..289 CDD:461021
NHL_PAL_like 355..656 CDD:271328 97/317 (31%)
NHL repeat 360..421 CDD:271328 18/62 (29%)
NHL repeat 427..469 CDD:271328 16/41 (39%)
NHL repeat 480..516 CDD:271328 11/42 (26%)
NHL repeat 524..560 CDD:271328 14/37 (38%)
NHL repeat 568..613 CDD:271328 11/51 (22%)
NHL repeat 627..656 CDD:271328 7/20 (35%)
Blue background indicates that the domain is not in the aligned region.

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