DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pal1 and pgal-1

DIOPT Version :10

Sequence 1:NP_610537.2 Gene:Pal1 / 36033 FlyBaseID:FBgn0283510 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_491475.2 Gene:pgal-1 / 172108 WormBaseID:WBGene00017671 Length:350 Species:Caenorhabditis elegans


Alignment Length:320 Identity:111/320 - (34%)
Similarity:164/320 - (51%) Gaps:47/320 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 KLGAVTAVSFDKAGNVVIFHRVNRVWGQTTFDNRNQYQEKYRGPIRESTILALEPATGKVQYDWG 171
            ::|.|:.::.:|.|::|.|||..|||.:.:|::...: .|..|.|...|| |:.....||..::|
 Worm    58 EIGQVSGLAVNKNGHIVAFHRSGRVWDEKSFNDHETF-NKDLGVINNKTI-AIISREKKVIDEFG 120

  Fly   172 KNFFYMPHGLTVDPEDNVWLTDVAMHQVFKFPPRGGDGKPALTLGDAFQPGSGR-KFCKPTSVAV 235
            ...||||||||:|...:.|:|||..|||.|...:  ..|..::||:...||..: .|||||.|||
 Worm   121 AGLFYMPHGLTIDNNGDYWVTDVGSHQVHKIDAK--TQKIVMSLGEKMVPGEDQAHFCKPTDVAV 183

  Fly   236 LDNGDFFVADGYCNARILKYSRKGELILFWGQNTFSGISYDVAPQNFFAIPHALTLVPELQLLCA 300
            ..||..||||||||:||||:..||.|:.     ..:..:.:..|.. |.:||:|:|:.::.::|.
 Worm   184 AKNGHIFVADGYCNSRILKFDAKGNLMA-----QINAATEENQPSE-FVVPHSLSLIEDMNIVCV 242

  Fly   301 ADRENGRVQCFLSSNGTFHSQYHNQLIGDRLF--SMAYTPAAG-GQLVIVNGPTAELGIHPEHY- 361
            |||||.|||||  |.|...        |||..  .:..|.|.. |::..:.        ..||| 
 Worm   243 ADRENQRVQCF--SAGLSE--------GDRTLPTGIPITSATDIGRVFAIR--------EREHYL 289

  Fly   362 ---------NEVHGFVLSMRSKQLVSKFGPNNLQFQNPHDVAVTADGNEIYVAELNPMRI 412
                     .|...|.:.|::.: ...|...   .:|.|.:|:.||| .::|::|.|.||
 Worm   290 IGVTGNSEDVEAQMFSIDMQTGK-TETFAKG---VRNTHALAIAADG-VMFVSQLEPSRI 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pal1NP_610537.2 NHL_PAL_like 97..416 CDD:271328 111/320 (35%)
NHL repeat 111..172 CDD:271328 19/60 (32%)
NHL repeat 178..220 CDD:271328 17/41 (41%)
NHL repeat 230..267 CDD:271328 22/36 (61%)
NHL repeat 283..321 CDD:271328 18/37 (49%)
NHL repeat 330..382 CDD:271328 11/64 (17%)
NHL repeat 388..415 CDD:271328 11/25 (44%)
pgal-1NP_491475.2 NHL_PAL_like 59..344 CDD:271328 109/317 (34%)
NHL repeat 62..121 CDD:271328 19/60 (32%)
NHL repeat 127..167 CDD:271328 17/41 (41%)
NHL repeat 178..215 CDD:271328 22/41 (54%)
NHL repeat 225..265 CDD:271328 21/49 (43%)
NHL repeat 321..344 CDD:271328 9/23 (39%)

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