DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pal1 and pam

DIOPT Version :10

Sequence 1:NP_610537.2 Gene:Pal1 / 36033 FlyBaseID:FBgn0283510 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001184164.1 Gene:pam / 100170159 XenbaseID:XB-GENE-950935 Length:985 Species:Xenopus tropicalis


Alignment Length:565 Identity:192/565 - (33%)
Similarity:285/565 - (50%) Gaps:98/565 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 VSQTQSP----QRYLHNVDSNSNN---NERLHQILKGSGAGSGATQLNWPQPPKQTVPNVK---- 85
            |.|.:.|    .|.:...|...|.   .:|:|:..|....         .:||..|:|.|:    
 Frog   430 VVQKKDPGWYYDRQVLGHDKQPNTVLVRDRIHKFHKLEST---------LRPPGNTLPQVQQGRP 485

  Fly    86 -----TELAKLNNTYVYQNA-WPANNVKLGAVTAVSFDKAGNVVIFHRVNRVWGQTTFDNRNQYQ 144
                 .|...|.:.::.::. ||..|:|:|.|:.::.|...|:|||||.:.||.:.:||....||
 Frog   486 AGADTREKQHLGDVHLEEDTDWPGVNLKVGQVSGLALDPKNNLVIFHRGDHVWDENSFDRNFVYQ 550

  Fly   145 EKYRGPIRESTILALEPATGKVQYDWGKNFFYMPHGLTVDPEDNVWLTDVAMHQVFKFPPRGGDG 209
            ::..|||:|||||.::|.|.||....|||.|::|||||:|.:.|.|:||||:|||||.   |.:.
 Frog   551 QRGIGPIQESTILVVDPNTSKVLKSAGKNLFFLPHGLTIDRDGNYWVTDVALHQVFKL---GAEK 612

  Fly   210 K-PALTLGDAFQPGSGRK-FCKPTSVAVLD--NGDFFVADGYCNARILKYSRKGELILFWGQNTF 270
            : |.|.||.||||||.|| ||:||.||| |  .|:|||:|||||:||:::|..|..|:.||..|.
 Frog   613 ETPLLVLGKAFQPGSDRKHFCQPTDVAV-DPITGNFFVSDGYCNSRIMQFSPNGMFIMQWGDETS 676

  Fly   271 SGISYDVAPQ-NFFAIPHALTLVPELQLLCAADRENGRVQCFLSSNGTFHSQYHNQLIGDRLFSM 334
            |.|     |: ..|.|||:||:||:...||.|||||||:|||.:..|.|..|..::..|..:|::
 Frog   677 STI-----PKPGQFRIPHSLTMVPDHGQLCVADRENGRIQCFHAETGKFVKQIKHREFGREVFAV 736

  Fly   335 AYTPAAGGQLVIVNGPTAELGIHPEHYNE---VHGFVLSMRSKQLVSKFGPNNLQFQNPHDVAVT 396
            :|.|  ||.|..|||        ..:|.:   |.||:|:..:.:::..|.|....|:.|||:|..
 Frog   737 SYAP--GGVLYAVNG--------KPYYGDSAPVQGFMLNFSNGEILDTFIPARKNFEMPHDIAAA 791

  Fly   397 ADGNEIYVAELNPMRIHKF-----VHRSLAKP-----------------MSLSASKDSRDSAISQ 439
            .||. :||.:.:...:.||     .|||:.|.                 .|...:.::.....:|
 Frog   792 DDGT-VYVGDAHANAVWKFSPSRAEHRSVKKAGIEVEEIKEIEIFETHMRSRPKTNETTTEKQAQ 855

  Fly   440 AVGGDQVPAVAVHHPSGKA-ILVASLMLLFAGSTFALALIFARRRKRGCLPFGARGRRHAWEKSD 503
            .....:..:|.....:|.: :|:.:|:::......|:| ||.|.||  ...:|. ...|..|.|.
 Frog   856 EKQTQEKQSVVQESSAGVSFVLIITLLIIPIVVLIAIA-IFIRWRK--VRMYGG-DIDHKSESSS 916

  Fly   504 GFKLGGLLDR-----------------DRNGFEKLDQQASDEEQE 531
            |..||.|..:                 .|.||::|..:.||:|::
 Frog   917 GGILGKLRGKGSGGLNLGTFFATHKGYSRKGFDRLSTEGSDQEKD 961

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pal1NP_610537.2 NHL_PAL_like 97..416 CDD:271328 144/332 (43%)
NHL repeat 111..172 CDD:271328 26/60 (43%)
NHL repeat 178..220 CDD:271328 23/42 (55%)
NHL repeat 230..267 CDD:271328 21/38 (55%)
NHL repeat 283..321 CDD:271328 22/37 (59%)
NHL repeat 330..382 CDD:271328 15/54 (28%)
NHL repeat 388..415 CDD:271328 8/26 (31%)
pamNP_001184164.1 Cu2_monooxygen 60..169 CDD:460053
Cu2_monoox_C 197..343 CDD:461021
NHL_PAL_like 503..810 CDD:271328 143/326 (44%)
NHL repeat 517..578 CDD:271328 26/60 (43%)
NHL repeat 584..624 CDD:271328 23/42 (55%)
NHL repeat 635..673 CDD:271328 21/38 (55%)
NHL repeat 685..723 CDD:271328 22/37 (59%)
NHL repeat 731..777 CDD:271328 15/55 (27%)
NHL repeat 783..809 CDD:271328 8/26 (31%)
Blue background indicates that the domain is not in the aligned region.

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