DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mef2 and AT1G72350

DIOPT Version :9

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_177379.1 Gene:AT1G72350 / 843567 AraportID:AT1G72350 Length:224 Species:Arabidopsis thaliana


Alignment Length:179 Identity:51/179 - (28%)
Similarity:75/179 - (41%) Gaps:58/179 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTD--MDR 64
            ||:||:|..|..|..|||||:||:.|:.|||.||||||..:|.:|.||..:::|.:.:.:  :|:
plant    43 GRQKIEIKEIMLETRRQVTFSKRRSGLFKKAAELSVLCGAQIGIITFSRCDRIYSFGNVNSLIDK 107

  Fly    65 VLLKYTEYNEPH----------------------ESLTNKNIIEKENKNGV-----------MSP 96
            .|.|.......|                      ||:..:::.|.:|...|           ||.
plant   108 YLRKAPVMLRSHPGGNVANGEEDNDGLMWWERAVESVPEEHMEEYKNALSVLRENLLTRIYQMSG 172

  Fly    97 D----------SPEAETDYTLTPRTEAKYNKIDEEFQNMMQRNQMAIGG 135
            |          :..|..|:.||.             :|:|.||....||
plant   173 DRTVENLPAFPNEMAMADWKLTN-------------ENLMARNDRGYGG 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 MADS_MEF2_like 2..78 CDD:238165 33/99 (33%)
HJURP_C 95..155 CDD:289143 12/51 (24%)
AT1G72350NP_177379.1 MADS_MEF2_like 43..109 CDD:238165 30/65 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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