DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mef2 and AGL58

DIOPT Version :9

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_174167.1 Gene:AGL58 / 839743 AraportID:AT1G28450 Length:185 Species:Arabidopsis thaliana


Alignment Length:129 Identity:34/129 - (26%)
Similarity:53/129 - (41%) Gaps:27/129 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVL 66
            |::||.|.:|..:.:|.||.:||...:.....|||:||..|:|.|.:|.|.|.|.:.|.....|:
plant     8 GKQKINIKKIEKDEDRSVTLSKRLNAIYTMIIELSILCGVEVAFIGYSCSGKPYTFGSPSFQAVV 72

  Fly    67 LKYTEYNEPHESLTNKNIIEKENKNGVMSPDSPEAETDYTLTPRTEAK-------YNKIDEEFQ 123
            .::.                    ||..|..|..:..........:||       ||::.||.:
plant    73 ERFL--------------------NGEASSSSSSSLQRSVKNAHKQAKIQELCKRYNRLVEELK 116

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 MADS_MEF2_like 2..78 CDD:238165 24/75 (32%)
HJURP_C 95..155 CDD:289143 8/36 (22%)
AGL58NP_174167.1 MADS_MEF2_like 8..80 CDD:238165 26/91 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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