DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mef2 and AGL65

DIOPT Version :9

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_001321504.1 Gene:AGL65 / 838457 AraportID:AT1G18750 Length:413 Species:Arabidopsis thaliana


Alignment Length:614 Identity:125/614 - (20%)
Similarity:189/614 - (30%) Gaps:256/614 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRV 65
            |||.|::|.|:....|||||:.|||.|::|||.|||:|||.:|.|::||.:.:.           
plant     1 MGRVKLKIKRLESTSNRQVTYTKRKNGILKKAKELSILCDIDIVLLMFSPTGRA----------- 54

  Fly    66 LLKYTEYNEPHESLTNKNIIEKENKNGVMSPDSPEAETDYTLTPRTEAK--YNKIDEE---FQNM 125
                |.::..|..:  :.:|.|      .:..:|:..|...|......|  :.|:|.:   ...:
plant    55 ----TAFHGEHSCI--EEVISK------FAQLTPQERTKRKLESLEALKKTFKKLDHDVNIHDFL 107

  Fly   126 MQRNQMAIGGAGAPRQLPNSSYTLPVSVPVPGSYGDNL---------LQASPQMSH--TNISPRP 179
            ..|||                 |:.|.:       |:|         |.:..|::.  .||:.|.
plant   108 GARNQ-----------------TIEVWI-------DHLRFMNFLGYFLISLSQIAKVCVNITTRQ 148

  Fly   180 SSSETDSVYPSGSMLEMSNGYPHSHSPL--------VGSPSPGPSPGIAHHLSIKQQSPGSQNGR 236
            ..|...::|.:..|        ..|..|        :.:         ..||.:.::|.     |
plant   149 GLSNQVAIYQAQLM--------ECHRRLSCWTNIDRIEN---------TEHLDLLEESL-----R 191

  Fly   237 ASNLRVVIPPTIAPIPPNMSAPDDVGYADQRQSQTSLNTPVVTLQTPIP-ALTSYSFGAQ---DF 297
            .|..|:                 .:.....|::|.          .||. |.|.:..|.|   ..
plant   192 KSIERI-----------------QIHKEHYRKNQL----------LPIECATTQFHSGIQLPMAM 229

  Fly   298 SSSGVMNSADIMSL---NTWHQGLVPHSS--LSHLAVSNSTPP------PATSPVSIKVKAEPQS 351
            ..:..|..|..||.   |...|.::|..|  |.|..:..|.|.      .:|.|.. ::.:.|..
plant   230 GGNSSMQEAHSMSWLPDNDHQQTILPGDSSFLPHREMDGSIPVYSSCFFESTKPED-QICSNPGQ 293

  Fly   352 PPRDLSASGHQQNSNGSTGSGGSSSSTSSNASGGAGGGGAVSAANVITHLNNVSVLAGGPSGQGG 416
            ....|     :|..||..|                                              
plant   294 QFEQL-----EQQGNGCLG---------------------------------------------- 307

  Fly   417 GGGGGGSNGNVEQATNLSVLSHAQQHHLGMPNSRPSSTGHITPTPGAPSSDQDVRLAAVA----V 477
                                  .||  ||...|.|:..|    |......||:.::.:..    :
plant   308 ----------------------LQQ--LGEEYSYPTPFG----TTLGMEEDQEKKIKSEMELNNL 344

  Fly   478 QQQQQQPHQQQQLGDYDAPNHKRPRISGGWGTXPARAAGSSHYKPHHNNNTGCSSINGSNTSCST 542
            ||||||..||||                         ...|.|.|..|||.||..| ..:.|...
plant   345 QQQQQQQQQQQQ-------------------------QDPSMYDPMANNNGGCFQI-PHDQSMFV 383

  Fly   543 N-----------NTITSSSNSSSSSNKKP 560
            |           |.:..|....:|.|::|
plant   384 NDHHHHHHHHHQNWVPDSMFGQTSYNQQP 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 MADS_MEF2_like 2..78 CDD:238165 29/75 (39%)
HJURP_C 95..155 CDD:289143 11/64 (17%)
AGL65NP_001321504.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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