DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mef2 and AGL78

DIOPT Version :9

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_201336.1 Gene:AGL78 / 836658 AraportID:AT5G65330 Length:341 Species:Arabidopsis thaliana


Alignment Length:351 Identity:69/351 - (19%)
Similarity:126/351 - (35%) Gaps:94/351 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 QISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQY---ASTDMDRVLLK 68
            |.|..:..||.....|:.| .:.|||.|||:||..|:.:|.:....:|..:   ..|..| :.|:
plant     3 QASSSSSSRNSTSLTNRLK-TIFKKAEELSILCAIEVCVIYYGPDGELRTWPKERETVKD-MALR 65

  Fly    69 YTEYNEPHESLTNKNIIEKENKNGVMSPDSPEAET----------DYTLTPRTEAKYNKIDEEFQ 123
            |.|..:..:|......:|||.       |..:.:|          |:....:.......::....
plant    66 YKEARKRKKSRNLHEFLEKEK-------DKDKGKTNLKKNWYPNFDHYSPQQLSQLIQSLERTLS 123

  Fly   124 NMMQRNQMAIGGAGAPRQLPNSSYTLPVSVPVPGSYGDNLLQASPQMSHTNISPRPSSSETDSVY 188
            .:.:|.::.     ..::|.|:                ||:..|...|:.|        :|..:.
plant   124 TLQERLRIV-----EAQKLQNT----------------NLVHQSLTPSYLN--------QTQHLN 159

  Fly   189 PSGSMLEMSNGYPHSHSPLVGSPSPGPSPGIAHHLSIKQQSPGSQNGRASNLRVVIPPTIAPIPP 253
            ||...|.|   |.|..:.|...|...|.   ::.| |..|:...|:|...|:             
plant   160 PSKFSLFM---YNHGDATLSQLPLSAPH---SNQL-INYQNHLMQHGFGQNM------------- 204

  Fly   254 NMSAPDDV---GYADQRQSQTSLNTPVVTLQTPIPALTSYSFGAQDFSSSGVMNSADIMSLNTWH 315
               ..|::   .:.....|.|...:|::::|.  .|:.:|..      ::.:|...|  .|:.:.
plant   205 ---CSDNITNNNFEHPGVSNTQDYSPLLSVQA--SAVNNYGL------NNHLMQQQD--QLHGFD 256

  Fly   316 QGLV-------PHSSLSHLAVSNSTP 334
            |.:.       .::.|.|..:||:.|
plant   257 QNMCMVSEIINNNNGLQHPNLSNTVP 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 MADS_MEF2_like 2..78 CDD:238165 22/73 (30%)
HJURP_C 95..155 CDD:289143 6/69 (9%)
AGL78NP_201336.1 MADS <19..79 CDD:412166 18/61 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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