DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mef2 and AGL42

DIOPT Version :9

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_001032123.1 Gene:AGL42 / 836337 AraportID:AT5G62165 Length:210 Species:Arabidopsis thaliana


Alignment Length:145 Identity:47/145 - (32%)
Similarity:82/145 - (56%) Gaps:20/145 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRV 65
            |.|.||::.:|.:..:|||||:||:.|::|||||||||||.:::|||||...:||:::|:||.:.
plant     1 MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSSDMQKT 65

  Fly    66 LLKYTEYNEPHESLTNKNIIEKENKNGVMSPDSPEAETDYTLTPRTEAKYNKID----------- 119
            :.:|.:|.:.||:         .|.:..:.....:.|..:.:|.....:::|..           
plant    66 IERYRKYTKDHET---------SNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCSL 121

  Fly   120 EEFQNMMQRNQMAIG 134
            ||.|.:..:.|.::|
plant   122 EELQEIDSQLQRSLG 136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 MADS_MEF2_like 2..78 CDD:238165 36/75 (48%)
HJURP_C 95..155 CDD:289143 8/51 (16%)
AGL42NP_001032123.1 MADS_MEF2_like 3..78 CDD:238165 36/74 (49%)
K-box 82..170 CDD:396188 8/55 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 71 1.000 Domainoid score I3346
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000108
OrthoInspector 1 1.000 - - otm2406
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X116
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.810

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