DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mef2 and AGL80

DIOPT Version :9

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_199678.1 Gene:AGL80 / 834925 AraportID:AT5G48670 Length:321 Species:Arabidopsis thaliana


Alignment Length:421 Identity:81/421 - (19%)
Similarity:144/421 - (34%) Gaps:145/421 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFS--SSNKLYQYASTDMD 63
            |.|||::::.|:::.:|:.||.|||.|:|||.:|||.||......||:|  .:|.....:::.:.
plant     1 MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPSNSGVQ 65

  Fly    64 RVLLKYTEYNEPHESLTNKNIIEKENKNGVMSPDSPEAETDYTLTPRTEAKYNKIDEEFQNMMQR 128
            ||:   :|:....|...:|.::::|   |.:.....:|    |.|.|.:.|.::..|..:.|.| 
plant    66 RVV---SEFRTLPEMDQHKKMVDQE---GFLKQRIAKA----TETLRRQRKDSRELEMTEVMFQ- 119

  Fly   129 NQMAIGGAGAPRQLPNSSYTLPVSVPVPGSYGDNLLQASPQMSHTNISPRPSSSETDSVYPSGSM 193
                                              .|..:.:|.|.||.         .:...|.|
plant   120 ----------------------------------CLIGNMEMFHLNIV---------DLNDLGYM 141

  Fly   194 LEMSNGYPHSHSPLVGSPSPGPSPGIAHHLSIKQQSPGSQNGRASNLRVVIPPTIAPIPPNMSAP 258
            :|..                  ...:...:.|.:.| |::.|.:|::.|.......|: ||:.| 
plant   142 IEQY------------------LKDVNRRIEILRNS-GTEIGESSSVAVAASEGNIPM-PNLVA- 185

  Fly   259 DDVGYADQRQSQTSLNTPVVTLQTPIPALTSYSFGAQDFSSSGVMNSADIMSLNTWHQGLVPHSS 323
                                   |..|..|.|..|:.. |.:.|.|..:.:.|..:.     |.:
plant   186 -----------------------TTAPTTTIYEVGSSS-SFAAVANFVNPIDLQQFR-----HPA 221

  Fly   324 LSHLAVSNSTP-------------------PPATSPVSIKVKAEPQS--------------PPRD 355
            ..|:.: |..|                   .....|..::.:.|...              .|::
plant   222 AQHVGL-NEQPQNLNLNLNQNYNQNQEWFMEMMNHPEQMRYQTEQMGYQFMDDNHHNHIHHQPQE 285

  Fly   356 LSASGHQQNSNGSTGSGGSS-----SSTSSN 381
            .....|.::||....:..||     ||:.:|
plant   286 HQHQIHDESSNALDAANSSSIIPVTSSSITN 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 MADS_MEF2_like 2..78 CDD:238165 26/77 (34%)
HJURP_C 95..155 CDD:289143 8/59 (14%)
AGL80NP_199678.1 MADS_SRF_like 2..85 CDD:238166 28/85 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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