DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mef2 and AGL89

DIOPT Version :9

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_198110.1 Gene:AGL89 / 832818 AraportID:AT5G27580 Length:223 Species:Arabidopsis thaliana


Alignment Length:213 Identity:48/213 - (22%)
Similarity:84/213 - (39%) Gaps:37/213 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVLLK 68
            ||..:|. :....:....:.|:..:.|||.|||.|||.|:.:|.:....:|.:....|..:|...
plant    22 KKSSLSS-SSTAKKTTNLSMREETMFKKALELSTLCDIEVCVIYYGRDGELIKTWPEDQSKVRDM 85

  Fly    69 YTEYNEPHE-----SLTNKNIIEKENKNGVMSPDSPEAETDYTLTPRTEAKYNKIDEEFQNMMQR 128
            ...:::.||     ..||.::..::.    :..|:..:|....:....|:....:.::...:...
plant    86 AERFSKLHERERRKKRTNLSLFLRKK----ILDDNKLSEKVLEMKDSLESGLRVLQDKLLLLQPE 146

  Fly   129 NQMAIGGAGAPRQLPNSSYTLPVSVP------------VPG-SYGDNLLQASPQMSHTNISPRPS 180
            ||..:|.:.|.     ||.|.|:|.|            |.| |..:..|..||..:|       .
plant   147 NQTELGQSRAV-----SSTTNPLSSPEDHHHQQWTEPLVTGVSNTEQDLSTSPLSNH-------Q 199

  Fly   181 SSETDSVY--PSGSMLEM 196
            |..:..||  .|||..::
plant   200 SKYSVFVYNHDSGSFYQV 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 MADS_MEF2_like 2..78 CDD:238165 20/78 (26%)
HJURP_C 95..155 CDD:289143 13/71 (18%)
AGL89NP_198110.1 MADS_SRF_like 35..103 CDD:238166 17/67 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.