DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mef2 and AGL93

DIOPT Version :9

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_198047.1 Gene:AGL93 / 832753 AraportID:AT5G26950 Length:289 Species:Arabidopsis thaliana


Alignment Length:265 Identity:58/265 - (21%)
Similarity:104/265 - (39%) Gaps:34/265 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVLLK 68
            ||..:|. :....:....:.|:..:.|||.|||.||:.::.:|.:....||.:....|..:|...
plant    22 KKSSLSS-SSTAKKTTNLSMREQTMFKKALELSTLCNIDVCVIYYGRDGKLIKTWPDDQSKVRDM 85

  Fly    69 YTEYNEPHE-----SLTNKNIIEKENKNGVMSPDSPEAETDYTLTPRTEAKYNKIDEEFQNMM-Q 127
            ...::..||     ..||.::..::.    :..|:..:|....:....|:....:.::...:. :
plant    86 AERFSRLHERERCKKRTNLSLFLRKK----ILDDTKLSEKVLEMEDSLESGLRVLQDKLLLLQPE 146

  Fly   128 RNQMAIGGAGAPRQLPNSSYTLPVSVPVPGSYGDNLLQASPQMSHTNISPRPSSSETDSVYPSGS 192
            :||...|...|.     ||.|.|:| |.|....|:..|...:...:.:|.......|.|:..:.|
plant   147 KNQTEFGQTRAV-----SSTTNPLS-PPPSLIEDHRHQQRTEPLMSGVSNTEQDLSTSSLSQNQS 205

  Fly   193 MLEMSNGYPHSHSPL------VGSPSPGPSPGIAHHLSIKQQSPGSQNGRASNLRVVIPP---TI 248
            ...:.. |.|.:...      |.|.....|.|:     :.:|  ||..|.:.:|.:|.||   |.
plant   206 KFSVFL-YNHDNCSFYQVPDSVSSFDSLTSTGL-----LGEQ--GSGLGSSFDLPMVFPPQMQTQ 262

  Fly   249 APIPP 253
            .|:.|
plant   263 TPLVP 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 MADS_MEF2_like 2..78 CDD:238165 19/78 (24%)
HJURP_C 95..155 CDD:289143 12/60 (20%)
AGL93NP_198047.1 MADS_SRF_like 35..103 CDD:238166 16/67 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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