DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mef2 and AGL34

DIOPT Version :10

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_850888.2 Gene:AGL34 / 832732 AraportID:AT5G26580 Length:345 Species:Arabidopsis thaliana


Alignment Length:500 Identity:93/500 - (18%)
Similarity:156/500 - (31%) Gaps:202/500 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRV 65
            ||.||:::|.|.:|.:|:.:|.|||.|:|||.||||.||..:...:|:|.               
plant     1 MGMKKVKLSLIANEISRETSFMKRKNGIMKKLYELSTLCGVQACTLIYSP--------------- 50

  Fly    66 LLKYTEYNEPHESLTNKNIIEKENKNGVMSPDSPEAETDYTLTPRTEAKYNKIDEEFQNMMQRNQ 130
            .:...|:.|...:...:.::.:|.               |.:...|:||     |:.||::..||
plant    51 FIPVPEFLEMSPTARTRKMMNQET---------------YLMERITKAK-----EQLQNLVGANQ 95

  Fly   131 M---------AIGGAGAPRQLPNSSY-----------------TLPVSVPVPGSYGDNLLQASPQ 169
            .         .:.|     ::....|                 .|...:.:...:||:|...|| 
plant    96 ELQVRRFMFDCVEG-----KMSQYRYDAKDLQDLLSCINLYLDQLNGRIEILKEHGDSLPSVSP- 154

  Fly   170 MSHTNISPRPSSSETDSVYPSGSMLEMSNGYPHSHSPLVGSPSPGPSPGIAHHLSIKQQSPGSQN 234
                              :|:...:|.:.....|.||::.:.....:|                 
plant   155 ------------------FPTRIGVEETGDESSSDSPILATTGVVDTP----------------- 184

  Fly   235 GRASNLRVVIPPTIAPIPPN---MSAP----DDVGYADQRQSQTSLNTPVVTLQTPIPALTSYSF 292
             .|:|.||::..|...:..|   ::||    :.:.|.:...||        .|..|...|...:|
plant   185 -NATNPRVLVADTTHFLDANATAVTAPFGFSNHIQYKNMNMSQ--------DLHRPFQHLVPTNF 240

  Fly   293 GAQDFSSSGVMNSADIMSLNTWHQGLVPHSSLSHLAVSNSTPPPATSPVSIKVKAEPQSPPRD-- 355
              .||..:..||                                         :.:.|:||.|  
plant   241 --CDFFQNQNMN-----------------------------------------QVQYQAPPNDMF 262

  Fly   356 --LSASGHQQNSNGSTGSGGSSSSTSSNASGGAGGGGAVSAANVITHLNNVSVLAGGPSGQGGGG 418
              :....:..|.|..:....:......|..             |..|:::|              
plant   263 NQIQREFYNINLNQKSNQYMNQQQPFMNPM-------------VEQHMSHV-------------- 300

  Fly   419 GGGGS----NGNVEQATNLSVLSHAQQHHLGMPNSRPSSTGHITP 459
            ||..|    :||......|.|:.|      |..:..||:||...|
plant   301 GGRESIPFMDGNYYNYNQLPVVDH------GSTSYMPSTTGVYDP 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 ARG80 1..>203 CDD:227400 46/227 (20%)
MADS_MEF2_like 2..78 CDD:238165 25/75 (33%)
AGL34NP_850888.2 MADS_SRF_like 2..71 CDD:238166 25/83 (30%)

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