DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mef2 and AGL34

DIOPT Version :9

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_850888.2 Gene:AGL34 / 832732 AraportID:AT5G26580 Length:345 Species:Arabidopsis thaliana


Alignment Length:500 Identity:93/500 - (18%)
Similarity:156/500 - (31%) Gaps:202/500 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRV 65
            ||.||:::|.|.:|.:|:.:|.|||.|:|||.||||.||..:...:|:|.               
plant     1 MGMKKVKLSLIANEISRETSFMKRKNGIMKKLYELSTLCGVQACTLIYSP--------------- 50

  Fly    66 LLKYTEYNEPHESLTNKNIIEKENKNGVMSPDSPEAETDYTLTPRTEAKYNKIDEEFQNMMQRNQ 130
            .:...|:.|...:...:.::.:|.               |.:...|:||     |:.||::..||
plant    51 FIPVPEFLEMSPTARTRKMMNQET---------------YLMERITKAK-----EQLQNLVGANQ 95

  Fly   131 M---------AIGGAGAPRQLPNSSY-----------------TLPVSVPVPGSYGDNLLQASPQ 169
            .         .:.|     ::....|                 .|...:.:...:||:|...|| 
plant    96 ELQVRRFMFDCVEG-----KMSQYRYDAKDLQDLLSCINLYLDQLNGRIEILKEHGDSLPSVSP- 154

  Fly   170 MSHTNISPRPSSSETDSVYPSGSMLEMSNGYPHSHSPLVGSPSPGPSPGIAHHLSIKQQSPGSQN 234
                              :|:...:|.:.....|.||::.:.....:|                 
plant   155 ------------------FPTRIGVEETGDESSSDSPILATTGVVDTP----------------- 184

  Fly   235 GRASNLRVVIPPTIAPIPPN---MSAP----DDVGYADQRQSQTSLNTPVVTLQTPIPALTSYSF 292
             .|:|.||::..|...:..|   ::||    :.:.|.:...||        .|..|...|...:|
plant   185 -NATNPRVLVADTTHFLDANATAVTAPFGFSNHIQYKNMNMSQ--------DLHRPFQHLVPTNF 240

  Fly   293 GAQDFSSSGVMNSADIMSLNTWHQGLVPHSSLSHLAVSNSTPPPATSPVSIKVKAEPQSPPRD-- 355
              .||..:..||                                         :.:.|:||.|  
plant   241 --CDFFQNQNMN-----------------------------------------QVQYQAPPNDMF 262

  Fly   356 --LSASGHQQNSNGSTGSGGSSSSTSSNASGGAGGGGAVSAANVITHLNNVSVLAGGPSGQGGGG 418
              :....:..|.|..:....:......|..             |..|:::|              
plant   263 NQIQREFYNINLNQKSNQYMNQQQPFMNPM-------------VEQHMSHV-------------- 300

  Fly   419 GGGGS----NGNVEQATNLSVLSHAQQHHLGMPNSRPSSTGHITP 459
            ||..|    :||......|.|:.|      |..:..||:||...|
plant   301 GGRESIPFMDGNYYNYNQLPVVDH------GSTSYMPSTTGVYDP 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 MADS_MEF2_like 2..78 CDD:238165 25/75 (33%)
HJURP_C 95..155 CDD:289143 12/85 (14%)
AGL34NP_850888.2 MADS_SRF_like 2..71 CDD:238166 25/83 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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