DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mef2 and TT16

DIOPT Version :9

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_001330404.1 Gene:TT16 / 832390 AraportID:AT5G23260 Length:268 Species:Arabidopsis thaliana


Alignment Length:158 Identity:46/158 - (29%)
Similarity:85/158 - (53%) Gaps:27/158 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTD---- 61
            |||.||:|.:|.::..|||||:||:.|::||..|||:|||..|.||:||::.||.::.|..    
plant    17 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMP 81

  Fly    62 --MDRVL----LKYTEYNEPHESLTNK-NIIEKENKN-------------GVMSP---DSPEAET 103
              :||.|    |:..::::..|.|.:: .::.:|..|             ..:.|   |..|.:.
plant    82 QLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQL 146

  Fly   104 DYTLTPRTEAKYNKIDEEFQNMMQRNQM 131
            ::::....|.|...:.::.:|:.::.:|
plant   147 EHSVLKVRERKNELMQQQLENLSRKRRM 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 MADS_MEF2_like 2..78 CDD:238165 34/85 (40%)
HJURP_C 95..155 CDD:289143 7/40 (18%)
TT16NP_001330404.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000108
OrthoInspector 1 1.000 - - otm2406
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X116
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.810

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