DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mef2 and PI

DIOPT Version :9

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_197524.1 Gene:PI / 832146 AraportID:AT5G20240 Length:208 Species:Arabidopsis thaliana


Alignment Length:142 Identity:52/142 - (36%)
Similarity:83/142 - (58%) Gaps:27/142 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYA--STDMD 63
            |||.||:|.||.:..||.|||:||:.|::|||.|::||||.::|||||:|:.|:..|.  |.|:.
plant     1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLG 65

  Fly    64 RVLLKYTE------YNEPHESLTNK-NIIEKENKNGVMSPDSPEAETDYTLTPRTEAKYNKIDEE 121
            .:|.:|.:      ::..||:|:|: :.|:|||       ||.:.|..:..           .|:
plant    66 AMLDQYQKLSGKKLWDAKHENLSNEIDRIKKEN-------DSLQLELRHLK-----------GED 112

  Fly   122 FQNMMQRNQMAI 133
            .|::..:|.||:
plant   113 IQSLNLKNLMAV 124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 MADS_MEF2_like 2..78 CDD:238165 36/83 (43%)
HJURP_C 95..155 CDD:289143 8/39 (21%)
PINP_197524.1 MADS_MEF2_like 2..80 CDD:238165 35/77 (45%)
K-box 83..165 CDD:396188 16/60 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000108
OrthoInspector 1 1.000 - - otm2406
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X116
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.810

Return to query results.
Submit another query.