DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mef2 and FLC

DIOPT Version :10

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_196576.1 Gene:FLC / 830878 AraportID:AT5G10140 Length:196 Species:Arabidopsis thaliana


Alignment Length:186 Identity:30/186 - (16%)
Similarity:66/186 - (35%) Gaps:56/186 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 ISQAKGRSFPSNSHHSNNR----------CNHSKTLKSEVKFIDIAIFTLWQTFFLQMLYVSWPK 89
            |::...|:||::.:..:..          |........|:.:..      .|:|...:|      
plant   606 ITRDINRTFPAHDYFKDTGGDGQDSLYKICKAYSVYDEEIGYCQ------GQSFLAAVL------ 658

  Fly    90 MFLNMPVSRIITMVTLILYLLAGFNCSVSATLVLLFRKKF----------------------LHM 132
             .|:||..:..:::..|::         ...|..||::.|                      .|.
plant   659 -LLHMPEEQAFSVLVKIMF---------DYGLRELFKQNFEDLHCKFYQLERLMQEYILDLYTHF 713

  Fly   133 VQLVEEADFLFSKYFYEIQHSKHHLVCVALLLGSFACQGLLILNDYTAGKMLVNTT 188
            :::..||....|::|..:..:|..|..|..::....|:|:.::.:...|  |:.|:
plant   714 LEISLEAHMYASQWFLTLFTAKFPLYMVFHIIDLLLCEGISVIFNVALG--LLKTS 767

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 ARG80 1..>203 CDD:227400 30/186 (16%)
MADS_MEF2_like 2..78 CDD:238165 7/52 (13%)
FLCNP_196576.1 MADS_MEF2_like 2..78 CDD:238165
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.