DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mef2 and AGL96

DIOPT Version :9

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_196268.1 Gene:AGL96 / 830538 AraportID:AT5G06500 Length:242 Species:Arabidopsis thaliana


Alignment Length:267 Identity:57/267 - (21%)
Similarity:108/267 - (40%) Gaps:64/267 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFS-------------SSN 52
            |.|||::.:.|.|:|.|:.:..:|..|::||..|||:|||...::::|:             ::|
plant     1 MARKKVRAAWIRDDRMRRASLKRRLTGLIKKVNELSILCDMRASVVVFNREEEQLTAWPSPEAAN 65

  Fly    53 KLYQ--YASTDMDRVLLKYTEYNEPHESLTNKNIIEKENKNGVMSPDSPEAETDYTLTPRTEAKY 115
            .|..  |:.||.:|.:    :..:|...:  :.:|||..|.   ..|:.:..|::          
plant    66 SLIDNFYSLTDHERTM----KAVDPESYV--QTVIEKIEKK---RADTRKVITEF---------- 111

  Fly   116 NKIDE-EFQNMMQRNQMAIGGAGAPRQLPNSSYTLPVSVPVPGSYGD-NLLQASPQMSHTNISPR 178
             ::|| .||....|....:....|.:.:|               |.| .|:..|.:|..|.:...
plant   112 -EMDELMFQVQNGRELADLSPTEADKLIP---------------YADKKLMWLSKRMGSTGVDAL 160

  Fly   179 PSSSETDSVYPSG-SMLEMSNGY----------PHSHSPL-VGSPSPGPSPGIAHHLSIKQQSPG 231
            .:|:.......:| :|:|....:          |...:|. |.:..|....|:..::....:..|
plant   161 RASNVASGSGGNGLNMMETGRSFYYVDKWVFVDPQVQNPCDVETHLPTMVSGLDLNMEPSDEDLG 225

  Fly   232 SQNGRAS 238
            :..|.:|
plant   226 TYKGESS 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 MADS_MEF2_like 2..78 CDD:238165 25/90 (28%)
HJURP_C 95..155 CDD:289143 9/60 (15%)
AGL96NP_196268.1 MADS_SRF_like 2..85 CDD:238166 24/86 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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