DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mef2 and mef2b

DIOPT Version :9

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_001265785.1 Gene:mef2b / 558073 ZFINID:ZDB-GENE-050208-357 Length:420 Species:Danio rerio


Alignment Length:539 Identity:172/539 - (31%)
Similarity:236/539 - (43%) Gaps:153/539 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRV 65
            |||||||||||.|:|||||||.|||||:||||||||||||||||||||:|:|:|:||||||||:|
Zfish     1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNRLFQYASTDMDKV 65

  Fly    66 LLKYTEYNEPHESLTNKNIIEKENKNGVMSPDSPEAETDYTLTPRTEAKYNKIDEEFQNMMQRNQ 130
            |||||||:|||||.||.:|:|...:.| :..:|.|.:.:..:|...| ||:.             
Zfish    66 LLKYTEYSEPHESRTNTDILETLRRKG-LGLESSEIDPEDGVTMGAE-KYHD------------- 115

  Fly   131 MAIGGAGAPRQLPNSSYTLPVSVPVPGSYGDNLLQASPQMSHTNISPRPSSSETDSVYPSGSMLE 195
                  |....|....|                  .:|.:.|:.:.  .:|:|            
Zfish   116 ------GMDLSLARQRY------------------YAPSLLHSEVI--NTSAE------------ 142

  Fly   196 MSNGYPHSHSPLVG---SPSPGPSPGIAHHLSIKQQSPGSQNGRASNLRVVIPPTIAPIPPNMSA 257
              |||.:|.:|.:|   :||..|       |..:   |||....::|..          |..|..
Zfish   143 --NGYINSSNPNLGAHRTPSYKP-------LCTR---PGSTGTVSANSH----------PALMGP 185

  Fly   258 PDDVGYADQRQSQTSLNTPVVTLQTPIPALTSYSFGAQDFSSSGVMNSADIMSLNTWHQGLV-PH 321
            ...:||:.......|   ..:.::||.|.         :.||.|....|        |.||. ..
Zfish   186 HAGLGYSMFPHGSLS---RALEMKTPPPL---------NMSSDGRRVEA--------HAGLCGTR 230

  Fly   322 SSLSHLAVSNSTPPPATSPVSIKVKAEPQSPPRDLSASGHQQNSNGSTG--SGGSSSSTSSNASG 384
            |||:: ||..||.           :|..||    :.|.||.. :.|.||  ..|.:.|.|..:..
Zfish   231 SSLAN-AVRESTK-----------RALYQS----MHAGGHMM-AMGKTGLLGHGLNYSPSEYSHP 278

  Fly   385 GAGGGGAVSAANV---ITHLN-NVSVLAGGPSGQGGGGGGGGSNGNVEQATNLSVLSHAQQHHLG 445
            |...|...|:.|.   :||.: :.|:::.|.:       .|||.....|:::.|..||... :|.
Zfish   279 GYTVGFQRSSMNTWQPLTHQDAHQSMISPGMA-------SGGSCSYPSQSSSPSSPSHPSL-NLS 335

  Fly   446 MPNSRPSSTGHITPTP-----------------GAPSSDQDVRLAAVAVQQ-----QQQQPHQQQ 488
            :.:.|.|....|:|||                 ..|.||:...|.....|:     |||.|::..
Zfish   336 IKSERTSPVHMISPTPPSHHMLQHSPIAEPKSSSCPPSDEYADLQREEAQKSSFSGQQQGPNRDP 400

  Fly   489 QLGDYDAPNHKRPRISGGW 507
            . ....:||.|:..||.||
Zfish   401 P-ETKSSPNPKQQDISNGW 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 MADS_MEF2_like 2..78 CDD:238165 65/75 (87%)
HJURP_C 95..155 CDD:289143 9/59 (15%)
mef2bNP_001265785.1 MADS_MEF2_like 2..78 CDD:238165 65/75 (87%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 91 1.000 Domainoid score I7654
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D320201at33208
OrthoFinder 1 1.000 - - FOG0000108
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X116
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
66.020

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