DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mef2 and Srf

DIOPT Version :9

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_001102772.1 Gene:Srf / 501099 RGDID:1559787 Length:504 Species:Rattus norvegicus


Alignment Length:387 Identity:91/387 - (23%)
Similarity:155/387 - (40%) Gaps:98/387 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVL 66
            ||.||::..|.::..|..||:|||.|:||||||||.|...::.|::.|.:..:|.:|:..:..::
  Rat   138 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMI 202

  Fly    67 LKYTEYNEPHESLTNKNIIEKENKNGVMSPDSPEAETDYTLTPRTEAKYNKIDEEFQNMMQRNQM 131
                      .|.|.|.:|:    ..:.|||||...     .|.|:.:.:....|..::..:...
  Rat   203 ----------TSETGKALIQ----TCLNSPDSPPRS-----DPSTDQRMSATGFEEPDLTYQVSE 248

  Fly   132 AIGGAGAPRQLPNSSYTLPVSVPVPGSYGDNLLQASPQMSHT-NISPRPSSSETD-------SVY 188
            : ..:|..:.....::|:   ..:||:  .:.:|.:|..|.| .:|..||...|:       ||.
  Rat   249 S-DSSGETKDTLKPAFTV---TNLPGT--TSTIQTAPSTSTTMQVSSGPSFPITNYLAPVSASVS 307

  Fly   189 PS------GSMLEMSNGYPHSHSPLVGSPS-----PG-------PSPGIAHHLSIKQQSPGSQNG 235
            ||      |::|:.:...|.|...|:..|:     ||       |...|..|.:.:|.||...:.
  Rat   308 PSAVSSANGTVLKSTGSGPVSSGGLMQLPTSFTLMPGGAVAQQVPVQAIHVHQAPQQASPSRDSS 372

  Fly   236 -----RASNLRVVIPPTI--APIPPNMS------APDDVGYA----------------------- 264
                 .:|:..|.:|.||  :.:|..:.      :|..|.||                       
  Rat   373 TDLTQTSSSGTVTLPATIMTSSVPTTVGGHMMYPSPHAVMYAPTSGLADGSLTVLNAFSQAPSTM 437

  Fly   265 ----DQRQS-----QTSLNTPVVTLQTPIPALTSYSFG--AQDFSSSGVMNSADIMSLNTWH 315
                .|.|.     |..|..|..|:|.|:.|:..:...  .|...||..:....:::|:..|
  Rat   438 QVSHSQVQEPGGVPQVFLTAPSGTVQIPVSAVQLHQMAVIGQQAGSSSNLTELQVVNLDATH 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 MADS_MEF2_like 2..78 CDD:238165 25/75 (33%)
HJURP_C 95..155 CDD:289143 10/59 (17%)
SrfNP_001102772.1 MADS_SRF_like 138..219 CDD:238166 30/94 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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