DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mef2 and Mef2b

DIOPT Version :9

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:XP_038950696.1 Gene:Mef2b / 498607 RGDID:1561733 Length:355 Species:Rattus norvegicus


Alignment Length:381 Identity:137/381 - (35%)
Similarity:190/381 - (49%) Gaps:81/381 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRV 65
            |||||||||||.|:|||||||.|||||:|||||||||||||:||||||:|:.:|:||||:|||||
  Rat     1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQYASSDMDRV 65

  Fly    66 LLKYTEYNEPHESLTNKNIIEKENKNGVMSPDSPEAETDYTLTPRTEAKYNKIDEEFQNMMQRNQ 130
            |||||||:|||||.||.:|::...:.|| ..|.||.:               ::|..:...::..
  Rat    66 LLKYTEYSEPHESRTNADILQTLKRRGV-GLDGPELD---------------MEEGPEGPGEKLL 114

  Fly   131 MAIGGAGAPRQLPNSSYTLPVSVPVPGSYGDNLLQASPQMSHTNISPR--PSSSETDSVYPS--G 191
            ..:||   .|.|.:         |.|..|     ..:|.||.:.:|.|  |::|..|   |.  |
  Rat   115 RTLGG---DRGLVS---------PPPRIY-----PVAPAMSVSELSYRVPPATSGCD---PGGLG 159

  Fly   192 SMLEMSNGYPHSHSPLVGSPSPGPSPGIAHHLSIKQQSP--GSQNGRASNLRVVIPPTIAPIPPN 254
            ....:.:..||...|.:|.|...||     ||:.|...|  .:.:||..:|           ||.
  Rat   160 EAPSVHSRSPHFRPPGLGHPIFSPS-----HLAGKTPPPLYLATDGRRPDL-----------PPG 208

  Fly   255 MSAPDDVGYADQRQSQTSLNTPVVTLQTPIPALTSYSF---GAQDFSSSGVMNSADIMSLNTWHQ 316
            :..... |....|...:.|.:|    ..|.|||.|::|   |          ::|....|.:..:
  Rat   209 LVGARG-GLGTSRSLYSGLQSP----GAPGPALGSFAFLPPG----------SAASARRLQSGRR 258

  Fly   317 GLVPHSSLSHLAVSNST--PPPATSPVSIK-VKAEPQSPPRDLSASGHQQNSNGST 369
            ...|.::|: ||.:...  |..|:.|.|:: ...||:..|.|.|.. ||..::.|:
  Rat   259 SSGPPAALA-LATNEGRGGPRRASCPQSVRGGSPEPRGLPSDTSGQ-HQIRTSVSS 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 MADS_MEF2_like 2..78 CDD:238165 63/75 (84%)
HJURP_C 95..155 CDD:289143 8/59 (14%)
Mef2bXP_038950696.1 MADS_MEF2_like 2..78 CDD:238165 63/75 (84%)
PHA03247 <125..351 CDD:223021 58/238 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D320201at33208
OrthoFinder 1 1.000 - - FOG0000108
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11945
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X116
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.920

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