DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mef2 and Mef2a

DIOPT Version :9

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:XP_038936753.1 Gene:Mef2a / 309957 RGDID:1359360 Length:503 Species:Rattus norvegicus


Alignment Length:440 Identity:183/440 - (41%)
Similarity:240/440 - (54%) Gaps:96/440 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRV 65
            ||||||||:||.|||||||||.|||||:||||||||||||||||||||:|||||:||||||||:|
  Rat     1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKV 65

  Fly    66 LLKYTEYNEPHESLTNKNIIEKENKNGVMSPDSPEAETDYTLTPRTEAKYNKIDEEFQNMMQRNQ 130
            |||||||||||||.||.:|:|..||......|||:.:|.|.|||.||.||.||:|||.|||:.::
  Rat    66 LLKYTEYNEPHESRTNSDIVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMRNHK 130

  Fly   131 MAIGGAGAPRQLPNSSYTLPVSVPV----------PGS-------------YGDNLLQASPQMSH 172
            :|.|       ||..::::.|:|||          |||             ...::|...|...|
  Rat   131 IAPG-------LPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLAESSMLSPPPATLH 188

  Fly   173 TNISP----RPSS--------SETDSVYPSGS-MLEMSNGYPHSH-SP-LVGS----------PS 212
            .|:||    ||.|        |.||...|:|: ...:.||:.:|. || |:|:          |:
  Rat   189 RNVSPGAPQRPPSTGSAGGMLSTTDLTVPNGAGNSPVGNGFVNSRASPNLIGNTGANSVGKVMPT 253

  Fly   213 PGPSPGIAHHLSIKQQSPG----SQNGRASNLRVVIPPTIAPIPPNMSAPDDVGYADQR----QS 269
            ..|.|            ||    ..|.|..:|||||||:...:.|.:|..:::....||    |:
  Rat   254 KSPPP------------PGGGSVGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNAQRISSSQA 306

  Fly   270 QTSLNTPVVTLQTP-----------IPAL--TSYSFGAQDFSSSGVMNSADIMSL---NTWHQGL 318
            ...|.||||::.||           :|..  |.||..:.|.|:.....|..::||   :.|.|..
  Rat   307 TQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFTSPGMLSLGQASAWQQHH 371

  Fly   319 VPHSSLSHLA----VSNSTPPPATSPVSIKVKAEPQSPPRD-LSASGHQQ 363
            :..::||.|.    :|..:.....:..:|.:|:||.||||| ::.||.||
  Rat   372 LGQAALSSLVAGGQLSQGSNLSINTNQNINIKSEPISPPRDRMTPSGFQQ 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 MADS_MEF2_like 2..78 CDD:238165 68/75 (91%)
HJURP_C 95..155 CDD:289143 26/59 (44%)
Mef2aXP_038936753.1 MADS_MEF2_like 2..78 CDD:238165 68/75 (91%)
HJURP_C 97..151 CDD:403531 28/60 (47%)
Herpes_BLLF1 <129..>380 CDD:282904 71/269 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 91 1.000 Domainoid score I7504
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 254 1.000 Inparanoid score I3108
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D320201at33208
OrthoFinder 1 1.000 - - FOG0000108
OrthoInspector 1 1.000 - - otm44768
orthoMCL 1 0.900 - - OOG6_103662
Panther 1 1.100 - - O PTHR11945
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X116
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.870

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