DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mef2 and mef2c

DIOPT Version :9

Sequence 1:NP_001260842.1 Gene:Mef2 / 36032 FlyBaseID:FBgn0011656 Length:606 Species:Drosophila melanogaster
Sequence 2:XP_012823888.1 Gene:mef2c / 100127198 XenbaseID:XB-GENE-486958 Length:472 Species:Xenopus tropicalis


Alignment Length:574 Identity:205/574 - (35%)
Similarity:274/574 - (47%) Gaps:167/574 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRV 65
            ||||||||:||.|||||||||.|||||:||||||||||||||||||||:|:|||:||||||||:|
 Frog     1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKV 65

  Fly    66 LLKYTEYNEPHESLTNKNIIEKENKNGVMSPDSPEAETDYTL--TPRTEAKYNKIDEEFQNMMQR 128
            |||||||||||||.||.:|:|...|.|:...|||:.:.|.::  :|.:|.||.||:|:...|:.|
 Frog    66 LLKYTEYNEPHESRTNSDIVETLRKKGLNGCDSPDPDADDSVGHSPESEDKYRKINEDIDLMISR 130

  Fly   129 NQMAIGGAGAPRQLPNSSYTLPVSVPV--PGS--YGD--------NLLQAS-PQMSHTNISP--- 177
            .::.        .:|..::.:|||:||  |.|  |.:        |||..| |.:...::||   
 Frog   131 QRLC--------AVPPPNFEMPVSIPVSNPNSLAYSNPAVSLGNHNLLPLSHPSLHRNSMSPGVT 187

  Fly   178 --RPSSSETDSV----YPSGSMLEMSNGY-PHSHSP--LVGSPSPGPSPGIAHHLSIKQQSPGS- 232
              .||:..|..:    ..:|:.....||| .|.:||  ||   |||   .:..::..|...|.: 
 Frog   188 HRPPSAGNTGGLMGGDLTTGAGTSAGNGYGNHRNSPGLLV---SPG---NLNKNMQTKSPPPMNL 246

  Fly   233 -QNGRASNLRVVIPPTIAPIPPNMSAPDDVGYADQR----QSQTSLNTPVVTLQTP-IPAL---- 287
             .|.|..:|||:|||......|::|...|: ..:||    ||..||.||||.:.|| :|..    
 Frog   247 GMNNRKPDLRVLIPPGSKNTMPSVSEDVDL-LLNQRINNSQSAQSLATPVVPVATPTLPGQGMGG 310

  Fly   288 ----------TSYSFGAQDFSS-SGVMNSA-DIMSLNTW---HQGLVPHSSLS--------HLAV 329
                      |.||..:.|.|| ||...|| .:.|:..|   |...:|||:||        ||:.
 Frog   311 YPTAISTTYGTEYSLSSADLSSLSGFNTSALHLGSVTGWQQHHLHNMPHSALSQLGACTSTHLSQ 375

  Fly   330 SNSTPPPATSPVSIKVKAEPQSPPRD--LSASGHQQNSNGSTGSG--GSSSSTSSNASGGAGGGG 390
            |::...|:|.  |:.:|:||.|||||  .:.||:.|::....|..  .|.||.||:..|      
 Frog   376 SSNLSLPSTQ--SLHIKSEPVSPPRDRTTTPSGYPQHTRHEAGRSPVDSLSSCSSSYDG------ 432

  Fly   391 AVSAANVITHLNNVSVLAGGPSGQGGGGGGGGSNGNVEQATNLSVLSHAQQHHLGMPNSRPSSTG 455
                                                          |..:.|.    |...|..|
 Frog   433 ----------------------------------------------SDREDHR----NDFHSPIG 447

  Fly   456 HITPTPGAPSSDQDVRLAAVAVQQQQQQPHQQQQLGDYDAPNHKRPRISGGWGT 509
            ...|:|       |.|                      ::|:.||.|:|.||.|
 Frog   448 LTRPSP-------DER----------------------ESPSVKRMRLSEGWAT 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mef2NP_001260842.1 MADS_MEF2_like 2..78 CDD:238165 67/75 (89%)
HJURP_C 95..155 CDD:289143 17/61 (28%)
mef2cXP_012823888.1 MADS_MEF2_like 2..78 CDD:238165 67/75 (89%)
HJURP_C <107..152 CDD:403531 15/52 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 91 1.000 Domainoid score I7556
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H31087
Inparanoid 1 1.050 252 1.000 Inparanoid score I3128
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D320201at33208
OrthoFinder 1 1.000 - - FOG0000108
OrthoInspector 1 1.000 - - otm47806
Panther 1 1.100 - - O PTHR11945
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1041
SonicParanoid 1 1.000 - - X116
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1010.190

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