Protein Alignment CG1441 and MS2

DIOPT Version :10

• Sequence 1: NP_610535.1
• Gene: CG1441 / 36029
• FlyBaseID: FBgn0033464
• Length: 517
• Species: Drosophila melanogaster
• Sequence 2: NP_187805.1
• Gene: MS2 / 820372
• AraportID: AT3G11980
• Length: 616
• Species: Arabidopsis thaliana
• Alignment Length: 529
• Identity: 128/529 - (24%)
• Similarity: 222/529 - (41%)
• Gaps: 109/529 - (20%)

  Fly    28 IAECFKGRSLFITGGTGFLGKVLVEKLLRSCGGLKRIYLLIRPKKGKDPQERIK-DIFQNVLFDQ 91
            |....:|:...|||.||||.|||:||:||....:.:|||||:.|..:...||:| ::....||:.
plant   124 IISFLQGKKFLITGSTGFLAKVLIEKVLRMAPDVSKIYLLIKAKSKEAAIERLKNEVLDAELFNT 188

  Fly    92 VKQMRGEEH---ILQQVVAIAGDVLSPGLGISEKDLETLRQEVSIVYHCAATVRFDEPLRNAVFM 153
            :|:..|..:   :|.:::.:.|::....:|:.....|.:.:||.::.:.||...|:|....|:.:
plant   189 LKETHGASYMSFMLTKLIPVTGNICDSNIGLQADSAEEIAKEVDVIINSAANTTFNERYDVALDI 253

  Fly   154 NTRGTKYMLELALTLKHLDFFAYCSTAYCH-LHVKTLYEKPY-------------------DPPA 198
            ||||...::..|...|.|..|...||||.: .....:.|||:                   |...
plant   254 NTRGPGNLMGFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFSMGDCIATENFLEGNRKALDVDR 318

  Fly   199 DPHKVMQACEWLTDDEVATIERKVLG-------AIPNTYAYTKSLAEALVVEKFEELPAVILRPS 256
            :....::|....|.::....:.|.||       ...:||.:||::.|.::.....::|.||:|||
plant   319 EMKLALEAARKGTQNQDEAQKMKDLGLERARSYGWQDTYVFTKAMGEMMINSTRGDVPVVIIRPS 383

  Fly   257 IVIPIWKEPIPGWTDNINGPTGLLIGAGKGVIRTMYCNSSGYGDFLPVDVAVNGILVASWRNITA 321
            ::...:|:|.|||.:.......:::..|||.:.....:..|..|.:|.|:.||..|.|..::..|
plant   384 VIESTYKDPFPGWMEGNRMMDPIVLCYGKGQLTGFLVDPKGVLDVVPADMVVNATLAAIAKHGMA 448

  Fly   322 GTDKTNRVAHMTSSNDIKVSWAEIIELGRWVIENKVPLNGVAWYPGGSMKSNYWVHFICM----- 381
            .:|....:      |..:::.:.|..|   |.|:...|           ..|::....||
plant   449 MSDPEPEI------NVYQIASSAINPL---VFEDLAEL-----------LYNHYKTSPCMDSKGD 493

  Fly   382 -VLFQWMPALF--VDAL---LW-------------------ILRYPPVLCRVQNRIYKGFE---- 417
             ::.:.| .||  ||..   ||                   :::....:|:      |..|
plant   494 PIMVRLM-KLFNSVDDFSDHLWRDAQERSGLMSGMSSVDSKMMQKLKFICK------KSVEQAKH 551

  Fly   418 ---VFEYYANNVWNFDNSEAVKLRKLMNNKERRTYVIEKIELDLIDYFTNCVLCARRLILKESDE 479
               ::|.|......||||...:|.:.|:..|:|.:..:...::..||.||.
plant   552 LATIYEPYTFYGGRFDNSNTQRLMENMSEDEKREFGFDVGSINWTDYITNV-------------- 602

  Fly   480 SIPAARRHM 488
            .||..|||:
plant   603 HIPGLRRHV 611

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG1441	NP_610535.1	FAR-N_SDR_e	35..348	CDD:187547	90/343 (26%)
		Sterile	384..475	CDD:460779	24/121 (20%)
MS2	NP_187805.1	PLN02503	1..616	CDD:215279	128/529 (24%)