DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1441 and Far2

DIOPT Version :9

Sequence 1:NP_610535.1 Gene:CG1441 / 36029 FlyBaseID:FBgn0033464 Length:517 Species:Drosophila melanogaster
Sequence 2:XP_006237759.1 Gene:Far2 / 500368 RGDID:1565966 Length:515 Species:Rattus norvegicus


Alignment Length:511 Identity:169/511 - (33%)
Similarity:271/511 - (53%) Gaps:38/511 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 IAECFKGRSLFITGGTGFLGKVLVEKLLRSCGGLKRIYLLIRPKKGKDPQERIKDIFQNVLFDQV 92
            ||..:..:|:.|||.||||||||:|||.|:...||.||:|:|||.|:..|||:..|..:.||::|
  Rat     4 IAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSKLFERV 68

  Fly    93 KQMRGEEHILQQVVAIAGDVLSPGLGISEKDLETLRQEVSIVYHCAATVRFDEPLRNAVFMNTRG 157
            |::....|  :::..|:.|:......||::|::.|....:||:|||||||||..||.||.:|...
  Rat    69 KEVCPNVH--EKIRPISADLNQRDFAISKEDMQELLSCTNIVFHCAATVRFDAHLREAVQLNVTA 131

  Fly   158 TKYMLELALTLKHLDFFAYCSTAYCHLHVKTLYEKPYDPPADPHKVMQACEWLTDDEVATIERKV 222
            |:.:|.:|..:..|:.|.:.|||:.:.::..:.|..|..|.:|.|::.:.|||.|..:..|..|:
  Rat   132 TQQLLLMASEMPKLEAFIHISTAFSNCNLSHIDEVIYPCPVEPRKIIDSMEWLDDSIIEEITPKL 196

  Fly   223 LGAIPNTYAYTKSLAEALVVEKFEELPAVILRPSIVIPIWKEPIPGWTDNINGPTGLLIGAGKGV 287
            :|..||||.|||:|.|.:|.::...|...|:|||||...|:||.|||.||:|||:||:|..|||.
  Rat   197 IGDRPNTYTYTKALGEVVVQQESGNLNVAIVRPSIVGATWQEPFPGWVDNLNGPSGLIIATGKGF 261

  Fly   288 IRTMYCNSSGYGDFLPVDVAVNGILVASWRNITAGTDKTNRVAHMTSSNDIKVSWAEIIELGRWV 352
            :|::........|.:|||..||..:...|.. .....|:..:.|.||.|....:|   .|:|..|
  Rat   262 LRSIKATPMAVADLIPVDTVVNLTIAVGWYT-AVHRPKSTLIYHSTSGNLNPCNW---YEMGLQV 322

  Fly   353 IE--NKVPLNGVAWYPGGSMKSN-----YWVHFICMVLFQWMPALFVDALLWILRYPPVLCRVQN 410
            :.  .|:|.......|.....:|     ||     ..:..|.||:..|..|.:....|.:.::.|
  Rat   323 LATVEKIPFESAFRRPNADFTTNNFTTQYW-----NTVSHWAPAIIYDFYLRLTGRKPRMLKLMN 382

  Fly   411 RIYKGFEVFEYYANNVWNFDNSEAVKLRKLMNNKERRTYVIEKIELDLIDYFTNCVLCARRLILK 475
            |:.|...:.||:.|:.|.:..:....|...::.:::|.:..:..:|:.::|..|.||..::.:||
  Rat   383 RLLKTISMLEYFINHSWEWSTNNTEMLLSELSPEDQRVFNFDVRQLNWLEYIENYVLGVKKYLLK 447

  Fly   476 ESDESIPAARRHMK---------------VMWVV----DKVYKGIWIFGILYMLYR 512
            |....||.|::|:|               ::|.:    .::.:.||.| |:...|:
  Rat   448 EDLAGIPKAKQHLKRLRNIHYLFNTALFLIIWRLLIARSQMARNIWFF-IVSFCYK 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1441NP_610535.1 PLN02996 24..464 CDD:215538 152/442 (34%)
FAR-N_SDR_e 35..348 CDD:187547 124/312 (40%)
Sterile 385..475 CDD:281068 20/89 (22%)
Far2XP_006237759.1 FAR-N_SDR_e 11..318 CDD:187547 124/312 (40%)
Sterile 357..447 CDD:397244 20/89 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351508
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG56516
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X145
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.760

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