DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lime and Plagl2

DIOPT Version :10

Sequence 1:NP_610529.1 Gene:Lime / 36023 FlyBaseID:FBgn0033458 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_061277.2 Gene:Plagl2 / 54711 MGIID:1933165 Length:496 Species:Mus musculus


Alignment Length:425 Identity:83/425 - (19%)
Similarity:129/425 - (30%) Gaps:180/425 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 PFQMPAVHQHPIQIPPMYM-------------TAQHTAYEPP----VQFLGHRPLELRQKLPMSP 229
            |..:|...|.|...|.::.             .|.|:|.:|.    ...:.||...||..|  ..
Mouse    57 PHSLPHPEQRPYSCPQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHL--QT 119

  Fly   230 QSPLEPSGHPMASAIPSNQHTSLEMQ-----------NLCVPEGILTRVEEPPVLENPRPQAQDP 283
            ..|.:.:.|  .|....|.:|.|..:           :|.....:.|......:||:.:..::  
Mouse   120 HDPNKEALH--CSECGKNYNTKLGYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAHSR-- 180

  Fly   284 IQDAGAGKSRSAVLIEPKPPNAKSLAFNQGQFECNWCGKRLSSRQSLKYHESHFHGNKELAVNRL 348
             :.||..|       |.|.|             |:.|.:|..:|:.::.|.....|.|:..    
Mouse   181 -RVAGGAK-------EKKHP-------------CDHCDRRFYTRKDVRRHLVVHTGRKDFL---- 220

  Fly   349 EKNLTKQHKCLTCKKRYKRRTFLLMHMKVKH---------------GI----------------- 381
                     |..|.:|:.|:..|..|:|..|               |:                 
Mouse   221 ---------CQYCAQRFGRKDHLTRHVKKSHSQELLKIKTEPVDMLGLLSCSSTVSVKEELSPVL 276

  Fly   382 -----------AFPGRV-----------------------NADP---EYPKSVDSPVSAKVPVSP 409
                       ||||.:                       |..|   .||.. .||:|:...:.|
Mouse   277 CMASRDVMGAKAFPGMLPMGMYGAHIPTMPSAGMPHSLVHNTLPMGMSYPLE-SSPISSSAQLPP 340

  Fly   410 MSS-------PNEAPKKEIWSTRIFNA-------VAAAKYQPASER-------ADKYLVA--PRQ 451
            ...       |::.||.|:.|   |.|       :::|:.||||.:       .|:.|:|  |..
Mouse   341 KYQLGSTSYLPDKLPKVEVDS---FLAELPGSLSLSSAEPQPASPQPAAAAALLDEALLAKSPAN 402

  Fly   452 QTEQLES---------GFTITSKRTYPLRSPYFNP 477
            .:|.|.:         ||       .||..|..||
Mouse   403 LSEALCAANVDFSHLLGF-------LPLNLPPCNP 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LimeNP_610529.1 PAT1 <112..>239 CDD:401645 15/73 (21%)
C2H2 Zn finger 317..336 CDD:275368 5/18 (28%)
C2H2 Zn finger 358..377 CDD:275368 6/18 (33%)
Plagl2NP_061277.2 C2H2 Zn finger 42..62 CDD:275368 1/4 (25%)
C2H2 Zn finger 70..92 CDD:275368 2/21 (10%)
zf-H2C2_2 85..107 CDD:463886 4/21 (19%)
zf-C2H2 98..120 CDD:395048 5/23 (22%)
C2H2 Zn finger 100..120 CDD:275368 5/21 (24%)
C2H2 Zn finger 129..149 CDD:275368 4/19 (21%)
C2H2 Zn finger 158..178 CDD:275368 3/19 (16%)
C2H2 Zn finger 193..213 CDD:275368 5/19 (26%)
C2H2 Zn finger 221..239 CDD:275368 6/17 (35%)

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