DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lime and si:dkey-14k9.3

DIOPT Version :9

Sequence 1:NP_610529.1 Gene:Lime / 36023 FlyBaseID:FBgn0033458 Length:487 Species:Drosophila melanogaster
Sequence 2:XP_017210435.1 Gene:si:dkey-14k9.3 / 324173 ZFINID:ZDB-GENE-030131-2893 Length:495 Species:Danio rerio


Alignment Length:444 Identity:84/444 - (18%)
Similarity:136/444 - (30%) Gaps:160/444 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 HRQTEPKRHP----AKMYPQIPSAI---PSPPFSPTDPTDMPLVKEILA--------------RS 66
            |::...|:||    :|.:.:..:|.   |:|..|..|..:....::..:              |:
Zfish   140 HQRIHSKKHPVSKRSKSFSRSQAAHQHGPAPETSSQDDAEENTRQKSYSCLYCRETFSSLSARRN 204

  Fly    67 EHINVPEGTV-LCVP-------------------------CYLCKQPFNDIESFKEHLTQHAAEI 105
            .|...||.|: .|..                         |..||..|....|:|:|:..|.:| 
Zfish   205 HHRTHPEETLNQCTACGKKLSSQAALKRHKQIHEEKQSYNCSKCKSTFICSTSYKQHMLTHESE- 268

  Fly   106 NAWNNTRAQEQTPPPTITPFVQSMNKPFVHPTDQHLFHSIDHGDMDHHHNAHYRNRMEFGCPPPM 170
                             .|||.:..|.|.:           .|.:..|...|..:| .:.|    
Zfish   269 -----------------RPFVCTCGKGFKY-----------RGALSAHKRTHTEDR-PYRC---- 300

  Fly   171 DFYSPPLEPEIPFQMP---AVHQ--HPIQIPPMYMTAQHTAYEPPVQFLGHRPLELRQKLPMSPQ 230
                  |:....|..|   ..||  |. :..|.:.|..|::.|..|                ..|
Zfish   301 ------LDCGKGFLYPGALTTHQKKHS-KGNPEHCTQCHSSTEKCV----------------CSQ 342

  Fly   231 SPLEPSGH-PMASAIPSNQHTSLEMQNLCVPEGILTRVEEPPVLENPRPQAQDPIQDAGAGKSRS 294
            |..|.|.. |....:.:.:.:.:..:        ||...|.|.|          ..|.|.|....
Zfish   343 SQAEKSFKCPTCDKLFAFKSSLIRHK--------LTHTGERPFL----------CSDCGKGFLTF 389

  Fly   295 AVLIEPKPPNAKSLAFNQGQ--FECNWCGKRLSSRQSLKYHESHFHGNKELAVNRLEKNL----- 352
            ..|:       |...::.|.  |:|..|.|..:....|:.|.....|.:..:.::.:|:.     
Zfish   390 GELL-------KHQRYHTGHKPFQCTDCEKSFTQACYLQVHMRQHTGVRPYSCSQCDKSFYSSSH 447

  Fly   353 TKQH----------KCLTCKKRYKRRTFLLMHMKVKHGIAFPGRVNADPEYPKS 396
            .|:|          :||.|.||:.:...|.:|        |...:...||..||
Zfish   448 LKRHLRIHSGEKPFECLDCGKRFPQPYHLKVH--------FQTHMQKKPESKKS 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LimeNP_610529.1 C2H2 Zn finger 317..336 CDD:275368 5/18 (28%)
C2H2 Zn finger 358..377 CDD:275368 7/18 (39%)
si:dkey-14k9.3XP_017210435.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24408
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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