DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lime and Zfp316

DIOPT Version :10

Sequence 1:NP_610529.1 Gene:Lime / 36023 FlyBaseID:FBgn0033458 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_001100591.1 Gene:Zfp316 / 304293 RGDID:1311647 Length:1016 Species:Rattus norvegicus


Alignment Length:480 Identity:83/480 - (17%)
Similarity:128/480 - (26%) Gaps:185/480 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 TELMNHHHHHRQTEP------------KRHPAKMYPQIPSAIPSPPFSPTDPTDMPLVKEILARS 66
            :.|..|..:|...:|            :.|.| ::.:..:.  ..||...|.....:.|..|...
  Rat   350 SRLAKHQRYHAAVKPFGCEECGKGFVYRSHLA-IHQRTHTG--EKPFPCPDCGKRFVYKSHLVTH 411

  Fly    67 EHINVPEGTVLCV-------------------------PCYLCKQPFNDIESFKEHLTQHAAEIN 106
            ..|:..|....||                         ||..|.:.|:...:...|...|.|:  
  Rat   412 RRIHTGERPYRCVFCGAGFGRRSYLVTHQRTHTGERPYPCLHCGRSFSQSSALARHQAVHTAD-- 474

  Fly   107 AWNNTRAQEQTPPPTITPFVQSMNKPFVHPTDQHLFHSIDHGDMDHHHNAHYRNRMEFGCPPPMD 171
                                    :|...|         |.|..........|:|...||..|..
  Rat   475 ------------------------RPHCCP---------DCGQAFRLRADFQRHRRGGGCTEPSS 506

  Fly   172 FYSPPLEPEIPFQMPAVHQHPIQIPP----MYMTAQHTA-------------YEPPVQFL-GHRP 218
            .......|           |.:.:.|    |.:.|..||             .||..... |...
  Rat   507 GDGALTAP-----------HEVGMAPNEVEMAIAAVATAEPEELESGLAEKNEEPKAGVADGDNE 560

  Fly   219 LELRQ-----------------------------------------------KLPMSPQSPLEPS 236
            :|:||                                               ..||.|:|.|.|.
  Rat   561 VEVRQDEQVVVAAAAEATVPDSKKDPEPDRRFREMGNGLAEGEGPSSHRFGFHFPMHPKSWLHPD 625

  Fly   237 GHPMASAIPSNQHTSLEMQNLCVPEGILTRVEEPPVLENPRPQAQDPIQDAGAG----------- 290
            |.|:......::....:.::|..|.|       .|:.......|.||.:.||.|           
  Rat   626 GFPLLGFPEFSERLQTDGRHLPGPLG-------APLSLQGMGLACDPFRSAGPGARADSGLRAFA 683

  Fly   291 KSRSAVLIEPKPPNAKSLAFNQGQFECNWCGKRLSSRQSLKYHESHFHGNKELAVNRLEKNLTKQ 355
            .:..::|.||.|   .:||..:..:.|:.|||....|.:|..|:.:..|.             :.
  Rat   684 PAVGSLLSEPAP---AALAEEESPWICSDCGKTFGRRAALAKHQRYHAGE-------------RP 732

  Fly   356 HKCLTCKKRYKRRTFLLMHMKVKHG 380
            |:|..|.|.:...:.|..|.:...|
  Rat   733 HRCADCGKSFVYGSHLARHRRTHTG 757

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LimeNP_610529.1 PAT1 <112..>239 CDD:401645 29/191 (15%)
C2H2 Zn finger 317..336 CDD:275368 7/18 (39%)
C2H2 Zn finger 358..377 CDD:275368 5/18 (28%)
Zfp316NP_001100591.1 KRAB 151..211 CDD:214630
COG5048 <335..495 CDD:227381 26/182 (14%)
C2H2 Zn finger 339..359 CDD:275368 2/8 (25%)
C2H2 Zn finger 367..387 CDD:275368 2/20 (10%)
zf-H2C2_2 379..404 CDD:463886 5/27 (19%)
C2H2 Zn finger 395..415 CDD:275368 3/19 (16%)
C2H2 Zn finger 423..443 CDD:275368 2/19 (11%)
C2H2 Zn finger 451..471 CDD:275368 4/19 (21%)
C2H2 Zn finger 479..497 CDD:275368 4/26 (15%)
C2H2 Zn finger 707..727 CDD:275368 7/19 (37%)
zf-C2H2 707..727 CDD:395048 7/19 (37%)
zf-H2C2_2 719..744 CDD:463886 7/37 (19%)
C2H2 Zn finger 735..755 CDD:275368 5/19 (26%)
COG5048 <760..947 CDD:227381
C2H2 Zn finger 763..783 CDD:275368
C2H2 Zn finger 791..811 CDD:275368
C2H2 Zn finger 819..839 CDD:275368
C2H2 Zn finger 847..867 CDD:275368
C2H2 Zn finger 875..895 CDD:275368
C2H2 Zn finger 903..923 CDD:275368
C2H2 Zn finger 931..951 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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