DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lime and ztf-29

DIOPT Version :10

Sequence 1:NP_610529.1 Gene:Lime / 36023 FlyBaseID:FBgn0033458 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_499490.1 Gene:ztf-29 / 176585 WormBaseID:WBGene00013438 Length:343 Species:Caenorhabditis elegans


Alignment Length:217 Identity:45/217 - (20%)
Similarity:74/217 - (34%) Gaps:73/217 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 EPKPPNAKSLAFNQGQFECNWCGKRLSSRQSLKYHESHFHGNKELAVNRLEKNLTKQHKCLTCKK 363
            |.|.|:.|      |:|.|..|||......||..|..:|||:.:              :||.|..
 Worm     8 ELKRPDLK------GEFLCGHCGKTFCHAASLNRHRLNFHGDDQ--------------QCLVCDT 52

  Fly   364 RYKRRTFLLMHMKVKHGI-----------AFPGR--VNADPEYPKSVDSPVSAKVPVSPMSSPNE 415
            :......:..||:.:|.|           .||.:  :::.........:|.:||:.......|..
 Worm    53 KIPHNDTIRRHMQKEHNIQRVFTCGCCNWTFPDKKELHSHNNSMLKTGTPGTAKIIAVSSRRPGS 117

  Fly   416 APKKEI----WSTRIFNAVAAAKYQPASERAD----------------KYLVAPRQQTEQLESGF 460
            ..:.|:    .|.||       |.:|:|:...                ..|::.:||.:|.    
 Worm   118 LSQHELRGEERSPRI-------KKRPSSKAMKTSDTPLTGHDQILALLSNLMSAQQQQQQA---- 171

  Fly   461 TITSKRTYPLRSPYFNPDLWLD 482
                    |:.:|.. |..|:|
 Worm   172 --------PVATPTI-PASWID 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LimeNP_610529.1 PAT1 <112..>239 CDD:401645
C2H2 Zn finger 317..336 CDD:275368 7/18 (39%)
C2H2 Zn finger 358..377 CDD:275368 5/18 (28%)
ztf-29NP_499490.1 COG5236 <15..>92 CDD:227561 22/96 (23%)
C2H2 Zn finger 20..40 CDD:275368 7/19 (37%)
C2H2 Zn finger 47..68 CDD:275368 5/20 (25%)
C2H2 Zn finger 76..92 CDD:275368 2/15 (13%)
U2AF_lg 112..>191 CDD:273727 17/93 (18%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.