DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lime and ztf-1

DIOPT Version :9

Sequence 1:NP_610529.1 Gene:Lime / 36023 FlyBaseID:FBgn0033458 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_498942.1 Gene:ztf-1 / 176236 WormBaseID:WBGene00018833 Length:582 Species:Caenorhabditis elegans


Alignment Length:430 Identity:72/430 - (16%)
Similarity:126/430 - (29%) Gaps:170/430 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 PQIPSAIPSPPFSPTDPTDM-PLVKEILARS--------------------------EHINV-PE 73
            |..||....||...|:..:. |||.|.:|..                          :::|: |:
 Worm    35 PNTPSPQEVPPKKMTNLFESGPLVYEDVAADIEAVTERASRRHYENKMVVKNSREMFDNVNILPD 99

  Fly    74 GTVLCVPCYLCKQPFNDIESFKEH--LTQHAAEINAWNNTRAQEQTPPPTITPFVQSMNKP---F 133
            |...|  | ||.:|      :|.|  ||.|....:..|.:                |.::|   |
 Worm   100 GRYYC--C-LCNRP------YKTHATLTAHLRGYHLRNES----------------SCDEPGCNF 139

  Fly   134 VHPTDQHLFHSIDHGDMDHHHNAHYRNRMEFGCPPPMDFYSPPLEPEIPFQMPAVHQHPIQIPPM 198
            :..|||         :...|...|.:.:.|......|                .:|         
 Worm   140 LSFTDQ---------EKKRHRRTHDKKKKERNSQESM----------------VIH--------- 170

  Fly   199 YMTAQHTAYEPPVQFLGHRPLELRQKLPMSPQSPLEPSGHPMASAIPSNQHTSLEMQNLCVPEGI 263
                                    :|:    |..:....:|....:..:.:.|.|:|..     |
 Worm   171 ------------------------EKI----QKAVRRLDYPGEDELRDHLNGSTEVQGT-----I 202

  Fly   264 LTRVEEPPVLENPRPQAQDPIQDAGAGKSRSAVLIEPKPPNAKSLAFNQGQF---------ECNW 319
            .|..::                    ||.|.|.|   |.|::...|::..:.         .|.:
 Worm   203 RTMTKK--------------------GKIRYACL---KCPHSVFNAYHAARHVEMHNDFPKNCFY 244

  Fly   320 CGKRLSSRQSLKYHESHFHGNKELAVNRLEKNLTKQHKCLTCKKRYKRRTFLLMHMKVKHGIAFP 384
            ||:.......|:.|....|.::.:          :..||..|..|:........|::.::|...|
 Worm   245 CGEIRKGTVDLQVHYMRVHKHEGI----------RTFKCSVCHLRFTTTILFRDHVECENGCQNP 299

  Fly   385 GRVNADPEYPKSVDSPVSAKVPVSPMSSPNEAPKKEIWST 424
             .:..|..|.:..:..:...:....:.  |...::|||.|
 Worm   300 -EIRQDIYYGELPEGTIVDDLTQDRLQ--NFRKRQEIWKT 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LimeNP_610529.1 C2H2 Zn finger 317..336 CDD:275368 5/18 (28%)
C2H2 Zn finger 358..377 CDD:275368 4/18 (22%)
ztf-1NP_498942.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24408
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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