DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PCB and PYC2

DIOPT Version :9

Sequence 1:NP_001163103.1 Gene:PCB / 36020 FlyBaseID:FBgn0027580 Length:1197 Species:Drosophila melanogaster
Sequence 2:NP_009777.1 Gene:PYC2 / 852519 SGDID:S000000422 Length:1180 Species:Saccharomyces cerevisiae


Alignment Length:1162 Identity:628/1162 - (54%)
Similarity:830/1162 - (71%) Gaps:20/1162 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 VLVANRGEIAIRVFRACTELGIKSVAVYSEQDKMHMHRQKADESYIVGK--GLPPVEAYLNIPEL 104
            :||||||||.||:||:..||.::::|:||.:|::.|||.||||:|::|:  ...||.|||.:.|:
Yeast    23 ILVANRGEIPIRIFRSAHELSMRTIAIYSHEDRLSMHRLKADEAYVIGEEGQYTPVGAYLAMDEI 87

  Fly   105 IRVCKENDVDAVHPGYGFLSERSDFAQAVIDAGLRFIGPSPEVVQKMGDKVAARVAAIEAGVPIV 169
            |.:.|::.||.:|||||||||.|:||..|:.||:.:|||..||:..:||||:||..|..|.||.|
Yeast    88 IEIAKKHKVDFIHPGYGFLSENSEFADKVVKAGITWIGPPAEVIDSVGDKVSARHLAARANVPTV 152

  Fly   170 PGTDGPVTTKEEALEFCKKHGLPVIFKAAYGGGGRGMRVVRKMEDVEESFQRASSEAKAAFGNGA 234
            |||.||:.|.:|||:|..::|.|||.|||:|||||||||||:.:||.::||||:|||:.|||||.
Yeast   153 PGTPGPIETVQEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDVADAFQRATSEARTAFGNGT 217

  Fly   235 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPRLPIEIRDKMTEAAVR 299
            .|:|:|:::|:|||||||.|..||||||:|||||||||||||||:|||..||.|:||.:...||:
Yeast   218 CFVERFLDKPKHIEVQLLADNHGNVVHLFERDCSVQRRHQKVVEVAPAKTLPREVRDAILTDAVK 282

  Fly   300 LARHVGYENAGTVEFLCDESGNFYFIEVNARLQVEHTVTEEITGIDLVQSQIRVAEGMTLPELGY 364
            ||:..||.||||.|||.|.....||||:|.|:|||||:||||||||:|.:||::|.|.||.:||.
Yeast   283 LAKVCGYRNAGTAEFLVDNQNRHYFIEINPRIQVEHTITEEITGIDIVSAQIQIAAGATLTQLGL 347

  Fly   365 TQDKIVPRGYAIQCRVTTEDPANDFQPNTGRLEVFRSGEGMGIRLDSASAYAGAIISPYYDSLLV 429
            .||||..||::||||:|||||:.:|||:||||||:||..|.|:|||..:|||||.|||:|||:||
Yeast   348 LQDKITTRGFSIQCRITTEDPSKNFQPDTGRLEVYRSAGGNGVRLDGGNAYAGATISPHYDSMLV 412

  Fly   430 KVISHASDLQSSASKMNRALREFRIRGVKTNIPFLLNVLENQKFLHGVLDTYFIDEHPQLFKFKP 494
            |.....|..:....||.|||.|||||||||||||||.:|.|..|:.|...|.|||:.||||:...
Yeast   413 KCSCSGSTYEIVRRKMIRALIEFRIRGVKTNIPFLLTLLTNPVFIEGTYWTTFIDDTPQLFQMVS 477

  Fly   495 SLNRAQKLLNYMGEVLVNGPQTPLATTLKPALVSPHVPEVPLDLSPEAIEREERGEA-KVTE--P 556
            |.|||||||:|:.::.|||........|.....:|.||.:          .:.:|.. .||:  |
Yeast   478 SQNRAQKLLHYLADLAVNGSSIKGQIGLPKLKSNPSVPHL----------HDAQGNVINVTKSAP 532

  Fly   557 PKGLREVLVCEGPEAFAKEVRNRKELLLMDTTFRDAHQSLLATRVRSHDLLKISPYVTHKFNNLY 621
            |.|.|:||:.:||..|||:||.....||||||:|||||||||||||:|||..|:|...|.....:
Yeast   533 PSGWRQVLLEKGPSEFAKQVRQFNGTLLMDTTWRDAHQSLLATRVRTHDLATIAPTTAHALAGAF 597

  Fly   622 SLENWGGATFDVALRFLHECPWERLEEMRKRIPNIPFQMLLRGANAVGYTSYPDNVVYKFCELAV 686
            :||.|||||||||:|||||.|||||.::|..:|||||||||||||.|.|:|.|||.:..|.:.|.
Yeast   598 ALECWGGATFDVAMRFLHEDPWERLRKLRSLVPNIPFQMLLRGANGVAYSSLPDNAIDHFVKQAK 662

  Fly   687 QTGMDIFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPKRTKYDLKYYTNLADELVK 751
            ..|:|||||||:||.|..|.:|:.|..||||||||.:.|:||:..|.: ||:|.||..:.:::|:
Yeast   663 DNGVDIFRVFDALNDLEQLKVGVNAVKKAGGVVEATVCYSGDMLQPGK-KYNLDYYLEVVEKIVQ 726

  Fly   752 AGTHVLCIKDMAGLLKPESARLLITAIRDKHPDIPIHIHTHDTSGAGVASMLACANAGADVVDVA 816
            .|||:|.||||||.:||.:|:|||.::|.::||:|||:|:||::|..||||.|||.|||||||||
Yeast   727 MGTHILGIKDMAGTMKPAAAKLLIGSLRTRYPDLPIHVHSHDSAGTAVASMTACALAGADVVDVA 791

  Fly   817 VDSMSGMTSQPSMGAVVASLQGTPLDTNLDLRTVSEYSAYWEQTRTLYAPFECTTTMRSGNADVY 881
            ::||||:|||||:.|::|||:|. :||.:::..|.|..|||.:.|.||:.||  ..::..:.:||
Yeast   792 INSMSGLTSQPSINALLASLEGN-IDTGINVEHVRELDAYWAEMRLLYSCFE--ADLKGPDPEVY 853

  Fly   882 LNEIPGGQYTNLQFQAFSLGLGDFFEDVKKAYREANLLLGDIIKVTPSSKVVGDLAQFMVQNDLT 946
            .:||||||.|||.|||..||||:.:.:.|:||||||.|||||:||||:||||||||||||.|.||
Yeast   854 QHEIPGGQLTNLLFQAQQLGLGEQWAETKRAYREANYLLGDIVKVTPTSKVVGDLAQFMVSNKLT 918

  Fly   947 ADQVLERAEELSFPKSVVEYLQGSIGIPHGGFPEPLRSRVLKDMPR-IEGRPGAELKDLDFDKLK 1010
            :|.:...|..|.||.||:::.:|.||.|:|||||||||.||::..| :..|||.||:..|.:|::
Yeast   919 SDDIRRLANSLDFPDSVMDFFEGLIGQPYGGFPEPLRSDVLRNKRRKLTCRPGLELEPFDLEKIR 983

  Fly  1011 KELQESHTCVTNRDVMSAALYPQVTNDFLNFREKYGPVDKLDTRIFLTGPKVGEEFDVPLERGKT 1075
            ::||.....:...||.|..:||:|..||...||.||.:..|.|:.||...:..||.:|.:|:|||
Yeast   984 EDLQNRFGDIDECDVASYNMYPRVYEDFQKIRETYGDLSVLPTKNFLAPAEPDEEIEVTIEQGKT 1048

  Fly  1076 LSVKALAVSADLKPNGIREVFFELNGQLRAVHILDKEAVKEIHVHPKANKSNKSEVGAPMPGTVI 1140
            |.:|..||....|..|.|||:|||||:||.:.:.||....:....|||:..:..::||||.|.:|
Yeast  1049 LIIKLQAVGDLNKKTGQREVYFELNGELRKIRVADKSQNIQSVAKPKADVHDTHQIGAPMAGVII 1113

  Fly  1141 DIRVKVGDKVEKGQPLVVLSAMKMEMVVQSPLAGVVKKLEIANGTKLEGEDLIMIIE 1197
            :::|..|..|:||:.:.|||||||||||.||..|.||.:.|.:|..::..||::::|
Yeast  1114 EVKVHKGSLVKKGESIAVLSAMKMEMVVSSPADGQVKDVFIKDGESVDASDLLVVLE 1170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PCBNP_001163103.1 CPSase_L_chain 39..147 CDD:278706 55/106 (52%)
pyruv_carbox 41..1197 CDD:130302 627/1160 (54%)
ATP-grasp_4 153..360 CDD:302634 132/206 (64%)
Biotin_carb_C 377..484 CDD:214878 65/106 (61%)
DRE_TIM_PC_TC_5S 584..867 CDD:163675 165/282 (59%)
PYC_OADA 880..1078 CDD:280576 105/198 (53%)
biotinyl_domain 1130..1196 CDD:133459 31/65 (48%)
PYC2NP_009777.1 PycA 15..1171 CDD:223968 628/1162 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346274
Domainoid 1 1.000 331 1.000 Domainoid score I171
eggNOG 1 0.900 - - E1_COG1038
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5422
Inparanoid 1 1.050 1170 1.000 Inparanoid score I16
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG63046
OrthoFinder 1 1.000 - - FOG0004118
OrthoInspector 1 1.000 - - otm46866
orthoMCL 1 0.900 - - OOG6_101725
Panther 1 1.100 - - O PTHR43778
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1045
SonicParanoid 1 1.000 - - X2859
TreeFam 1 0.960 - -
1514.790

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