DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PCB and Mccc1

DIOPT Version :9

Sequence 1:NP_001163103.1 Gene:PCB / 36020 FlyBaseID:FBgn0027580 Length:1197 Species:Drosophila melanogaster
Sequence 2:NP_076133.3 Gene:Mccc1 / 72039 MGIID:1919289 Length:717 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PCBNP_001163103.1 CPSase_L_chain 39..147 CDD:278706
pyruv_carbox 41..1197 CDD:130302
ATP-grasp_4 153..360 CDD:302634
Biotin_carb_C 377..484 CDD:214878
DRE_TIM_PC_TC_5S 584..867 CDD:163675
PYC_OADA 880..1078 CDD:280576
biotinyl_domain 1130..1196 CDD:133459
Mccc1NP_076133.3 PccA 45..712 CDD:227111
CPSase_L_chain 45..153 CDD:278706
ATP-grasp_4 159..365 CDD:302634
Biotin_carb_C 379..485 CDD:280880
biotinyl_domain 647..710 CDD:133459
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.