DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PCB and Pcx

DIOPT Version :9

Sequence 1:NP_001163103.1 Gene:PCB / 36020 FlyBaseID:FBgn0027580 Length:1197 Species:Drosophila melanogaster
Sequence 2:NP_001156418.1 Gene:Pcx / 18563 MGIID:97520 Length:1179 Species:Mus musculus


Alignment Length:1181 Identity:802/1181 - (67%)
Similarity:967/1181 - (81%) Gaps:30/1181 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 PRVRLNAIFKNGYSSKVEYKPIRSVLVANRGEIAIRVFRACTELGIKSVAVYSEQDKMHMHRQKA 82
            |.||           ::|||||:.|:||||||||||||||||||||::||||||||...||||||
Mouse    28 PNVR-----------RLEYKPIKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKA 81

  Fly    83 DESYIVGKGLPPVEAYLNIPELIRVCKENDVDAVHPGYGFLSERSDFAQAVIDAGLRFIGPSPEV 147
            ||:|::|:||.||:|||:||::|:|.|||.||||||||||||||:|||||..|||:|||||||||
Mouse    82 DEAYLIGRGLAPVQAYLHIPDIIKVAKENGVDAVHPGYGFLSERADFAQACQDAGVRFIGPSPEV 146

  Fly   148 VQKMGDKVAARVAAIEAGVPIVPGTDGPVTTKEEALEFCKKHGLPVIFKAAYGGGGRGMRVVRKM 212
            |:||||||.||..||.||||:|||||.|:::..||.||...:|.|:||||||||||||||||...
Mouse   147 VRKMGDKVEARAIAIAAGVPVVPGTDSPISSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSY 211

  Fly   213 EDVEESFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVV 277
            |::||::.||.|||.|||||||:|:|||||:|||||||:|||:.||::||||||||:||||||||
Mouse   212 EELEENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVV 276

  Fly   278 EIAPAPRLPIEIRDKMTEAAVRLARHVGYENAGTVEFLCDESGNFYFIEVNARLQVEHTVTEEIT 342
            |||||..|..::|.::|..:|:||:.||||||||||||.|:.|..||||||:|||||||||||||
Mouse   277 EIAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVNSRLQVEHTVTEEIT 341

  Fly   343 GIDLVQSQIRVAEGMTLPELGYTQDKIVPRGYAIQCRVTTEDPANDFQPNTGRLEVFRSGEGMGI 407
            .:|||.:||.|:||.:||:||..|:.|...|.||||||||||||..|||:|||:|||||||||||
Mouse   342 DVDLVHAQIHVSEGRSLPDLGLRQENIRINGCAIQCRVTTEDPARSFQPDTGRIEVFRSGEGMGI 406

  Fly   408 RLDSASAYAGAIISPYYDSLLVKVISHASDLQSSASKMNRALREFRIRGVKTNIPFLLNVLENQK 472
            |||:|||:.||:|||:|||||||||:|..|..::|:||:|||.|||:||||||||||.|||.||:
Mouse   407 RLDNASAFQGAVISPHYDSLLVKVIAHGKDHPTAATKMSRALAEFRVRGVKTNIPFLQNVLNNQQ 471

  Fly   473 FLHGVLDTYFIDEHPQLFKFKPSLNRAQKLLNYMGEVLVNGPQTPLATTLKPALVSPHVPEVPLD 537
            ||.|.:||.||||:|:||:.:|:.|||||||:|:|.|:||||.||:...:.|:.|.|.||.||  
Mouse   472 FLAGTVDTQFIDENPELFQLRPAQNRAQKLLHYLGHVMVNGPTTPIPVNVSPSPVDPAVPVVP-- 534

  Fly   538 LSPEAIEREERGEAKVTEPPKGLREVLVCEGPEAFAKEVRNRKELLLMDTTFRDAHQSLLATRVR 602
                           :..||.|.|::|:.||||.||:.|||.:.|||||||||||||||||||||
Mouse   535 ---------------IGPPPAGFRDILLREGPEGFARAVRNHQGLLLMDTTFRDAHQSLLATRVR 584

  Fly   603 SHDLLKISPYVTHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKRIPNIPFQMLLRGANA 667
            :|||.||:|||.|.||.|:|:|||||||||||:|||:||||.||:|:|:.|||||||||||||||
Mouse   585 THDLKKIAPYVAHNFNKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANA 649

  Fly   668 VGYTSYPDNVVYKFCELAVQTGMDIFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDP 732
            ||||:||||||:||||:|.:.|||:||||||||||||::|||||||.|||||||||||||||:||
Mouse   650 VGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADP 714

  Fly   733 KRTKYDLKYYTNLADELVKAGTHVLCIKDMAGLLKPESARLLITAIRDKHPDIPIHIHTHDTSGA 797
            .||||.|:||..||:|||:||||:||||||||||||.:..:|::::||:.||:|:||||||||||
Mouse   715 SRTKYSLEYYMGLAEELVRAGTHILCIKDMAGLLKPAACTMLVSSLRDRFPDLPLHIHTHDTSGA 779

  Fly   798 GVASMLACANAGADVVDVAVDSMSGMTSQPSMGAVVASLQGTPLDTNLDLRTVSEYSAYWEQTRT 862
            |||:|||||.||||||||||||||||||||||||:||..:||||||.:.|..|.:||.|||..|.
Mouse   780 GVAAMLACAQAGADVVDVAVDSMSGMTSQPSMGALVACTKGTPLDTEVPLERVFDYSEYWEGARG 844

  Fly   863 LYAPFECTTTMRSGNADVYLNEIPGGQYTNLQFQAFSLGLGDFFEDVKKAYREANLLLGDIIKVT 927
            |||.|:||.||:|||:|||.|||||||||||.|||.|:|||..|::|||||.|||.:|||:||||
Mouse   845 LYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVT 909

  Fly   928 PSSKVVGDLAQFMVQNDLTADQVLERAEELSFPKSVVEYLQGSIGIPHGGFPEPLRSRVLKDMPR 992
            ||||:|||||||||||.|:..:...:|||||||:||||:|||.|||||||||||.||:||||:||
Mouse   910 PSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGIPHGGFPEPFRSKVLKDLPR 974

  Fly   993 IEGRPGAELKDLDFDKLKKELQESH-TCVTNRDVMSAALYPQVTNDFLNFREKYGPVDKLDTRIF 1056
            |||||||.|..|:..:|:|:|.:.| ..||..||:|||:||.|...|.:|...:||:|.|:||:|
Mouse   975 IEGRPGASLPPLNLKELEKDLIDRHGEEVTPEDVLSAAMYPDVFAQFKDFTATFGPLDSLNTRLF 1039

  Fly  1057 LTGPKVGEEFDVPLERGKTLSVKALAVSADLKPNGIREVFFELNGQLRAVHILDKEAVKEIHVHP 1121
            |.|||:.|||:|.|||||||.:|||||| ||...|.|:||||||||||::.:.|.:|:||:|.||
Mouse  1040 LQGPKIAEEFEVELERGKTLHIKALAVS-DLNRAGQRQVFFELNGQLRSILVKDTQAMKEMHFHP 1103

  Fly  1122 KANKSNKSEVGAPMPGTVIDIRVKVGDKVEKGQPLVVLSAMKMEMVVQSPLAGVVKKLEIANGTK 1186
            ||.|..|.::||||||.||||:|..||||.|||||.||||||||.||.||:.|.::|:.:.....
Mouse  1104 KALKDVKGQIGAPMPGKVIDIKVAAGDKVAKGQPLCVLSAMKMETVVTSPMEGTIRKVHVTKDMT 1168

  Fly  1187 LEGEDLIMIIE 1197
            |||:|||:.||
Mouse  1169 LEGDDLILEIE 1179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PCBNP_001163103.1 CPSase_L_chain 39..147 CDD:278706 83/107 (78%)
pyruv_carbox 41..1197 CDD:130302 792/1156 (69%)
ATP-grasp_4 153..360 CDD:302634 140/206 (68%)
Biotin_carb_C 377..484 CDD:214878 79/106 (75%)
DRE_TIM_PC_TC_5S 584..867 CDD:163675 218/282 (77%)
PYC_OADA 880..1078 CDD:280576 132/198 (67%)
biotinyl_domain 1130..1196 CDD:133459 40/65 (62%)
PcxNP_001156418.1 PRK12999 34..1179 CDD:237263 797/1162 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849588
Domainoid 1 1.000 452 1.000 Domainoid score I506
eggNOG 1 0.900 - - E1_COG1038
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5422
Inparanoid 1 1.050 1607 1.000 Inparanoid score I83
Isobase 1 0.950 - 0 Normalized mean entropy S286
OMA 1 1.010 - - QHG63046
OrthoDB 1 1.010 - - D130620at33208
OrthoFinder 1 1.000 - - FOG0004118
OrthoInspector 1 1.000 - - oto94244
orthoMCL 1 0.900 - - OOG6_101725
Panther 1 1.100 - - LDO PTHR43778
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1045
SonicParanoid 1 1.000 - - X2859
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1716.750

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