DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PCB and pyc-1

DIOPT Version :9

Sequence 1:NP_001163103.1 Gene:PCB / 36020 FlyBaseID:FBgn0027580 Length:1197 Species:Drosophila melanogaster
Sequence 2:NP_001369995.1 Gene:pyc-1 / 179616 WormBaseID:WBGene00004258 Length:1175 Species:Caenorhabditis elegans


Alignment Length:1185 Identity:788/1185 - (66%)
Similarity:968/1185 - (81%) Gaps:22/1185 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 PRVRLNAI----FKNGYSSKVEYKPIRSVLVANRGEIAIRVFRACTELGIKSVAVYSEQDKMHMH 78
            |.:..|.:    ::|..:..::.:....|:||||||||||||||.|||...|||:|:||||..||
 Worm     7 PPIFANVVRQTHYRNYANGVIKPREFNKVMVANRGEIAIRVFRALTELNKTSVAIYAEQDKNSMH 71

  Fly    79 RQKADESYIVGKGLPPVEAYLNIPELIRVCKENDVDAVHPGYGFLSERSDFAQAVIDAGLRFIGP 143
            |.||||:|:||||||||.|||.|.::|....::::||:||||||||||||||.|..:||:.||||
 Worm    72 RLKADEAYLVGKGLPPVAAYLTIDQIIETALKHNIDAIHPGYGFLSERSDFAAACQNAGIVFIGP 136

  Fly   144 SPEVVQKMGDKVAARVAAIEAGVPIVPGTDGPVTTKEEALEFCKKHGLPVIFKAAYGGGGRGMRV 208
            ||:|:.:||||||||.|||||||.:||||.||:||.:||:||.|::|.|:|.||||||||||:|.
 Worm   137 SPDVMARMGDKVAARQAAIEAGVQVVPGTPGPITTADEAVEFAKQYGTPIILKAAYGGGGRGIRR 201

  Fly   209 VRKMEDVEESFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRH 273
            |.|:|:|||:|:|:.|||:||||:|::|:|||:|||||||||||||..||:||||||||||||||
 Worm   202 VDKLEEVEEAFRRSYSEAQAAFGDGSLFVEKFVERPRHIEVQLLGDHHGNIVHLYERDCSVQRRH 266

  Fly   274 QKVVEIAPAPRLPIEIRDKMTEAAVRLARHVGYENAGTVEFLCDESGNFYFIEVNARLQVEHTVT 338
            ||||||||||.||..:|:|:...|:||||||||:||||||||.|:.||:||||||||||||||||
 Worm   267 QKVVEIAPAPALPEGVREKILADALRLARHVGYQNAGTVEFLVDQKGNYYFIEVNARLQVEHTVT 331

  Fly   339 EEITGIDLVQSQIRVAEGMTLPELGYTQDKIVPRGYAIQCRVTTEDPANDFQPNTGRLEVFRSGE 403
            |||||:||||:|||:|||.:|.:|..:|:.|...|.||||||||||||..|||::||:|||||||
 Worm   332 EEITGVDLVQAQIRIAEGKSLDDLKLSQETIQTTGSAIQCRVTTEDPAKGFQPDSGRIEVFRSGE 396

  Fly   404 GMGIRLDSASAYAGAIISPYYDSLLVKVISHASDLQSSASKMNRALREFRIRGVKTNIPFLLNVL 468
            |||||||||||:||::|||:||||:||||:.|.:..::|:||.|||::|||||||||||||||||
 Worm   397 GMGIRLDSASAFAGSVISPHYDSLMVKVIASARNHPNAAAKMIRALKKFRIRGVKTNIPFLLNVL 461

  Fly   469 ENQKFLHGVLDTYFIDEHPQLFKFKPSLNRAQKLLNYMGEVLVNGPQTPLATTLKPALVSPHVPE 533
            ....||...:|||||||||:||:||||.|||||||||:|||.||||.|||||.||||:|||.:|.
 Worm   462 RQPSFLDASVDTYFIDEHPELFQFKPSQNRAQKLLNYLGEVKVNGPTTPLATDLKPAVVSPPIPY 526

  Fly   534 VPLDLSPEAIEREERGEAKVTEPPKGLREVLVCEGPEAFAKEVRNRKELLLMDTTFRDAHQSLLA 598
            :|..                .:||.|||:|||..||..||||||:|...::.|||||||||||||
 Worm   527 IPAG----------------AKPPTGLRDVLVQRGPTEFAKEVRSRPGCMITDTTFRDAHQSLLA 575

  Fly   599 TRVRSHDLLKISPYVTHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKRIPNIPFQMLLR 663
            ||||::|:..|||:|...||.|:||||||||||||::|||||||||||:.:||.|||||||.|||
 Worm   576 TRVRTYDMAAISPFVAQSFNGLFSLENWGGATFDVSMRFLHECPWERLQTLRKLIPNIPFQCLLR 640

  Fly   664 GANAVGYTSYPDNVVYKFCELAVQTGMDIFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGD 728
            ||||:||::|||||:||||||||:.|||:|||||||||||||::||||.|||||||||||:||||
 Worm   641 GANAMGYSNYPDNVIYKFCELAVKNGMDVFRVFDSLNYLPNLLVGMEAVGKAGGVVEAAIAYTGD 705

  Fly   729 VSDPKRTKYDLKYYTNLADELVKAGTHVLCIKDMAGLLKPESARLLITAIRDKHPDIPIHIHTHD 793
            |:|..|.|||||||.||||:||||..|:|.||||||:||||:|:|||.|:|||.||||||:||||
 Worm   706 VTDKSRDKYDLKYYLNLADQLVKAQAHILSIKDMAGVLKPEAAKLLIGALRDKFPDIPIHVHTHD 770

  Fly   794 TSGAGVASMLACANAGADVVDVAVDSMSGMTSQPSMGAVVASLQGTPLDTNLDLRTVSEYSAYWE 858
            |||||||:||.||.|||||||.||||||||||||||||:|||||||..||.|.|..:|:||||||
 Worm   771 TSGAGVAAMLECAKAGADVVDAAVDSMSGMTSQPSMGAIVASLQGTKHDTGLSLDDISKYSAYWE 835

  Fly   859 QTRTLYAPFECTTTMRSGNADVYLNEIPGGQYTNLQFQAFSLGLGDFFEDVKKAYREANLLLGDI 923
            .||.|||||||.|||:|||||||.:||||||||||||||||||||..|::||:.||||||:||||
 Worm   836 STRQLYAPFECATTMKSGNADVYKHEIPGGQYTNLQFQAFSLGLGPQFDEVKRMYREANLVLGDI 900

  Fly   924 IKVTPSSKVVGDLAQFMVQNDLTADQVLERAEELSFPKSVVEYLQGSIGIPHGGFPEPLRSRVLK 988
            ||||||||:|||||||||||:||.:.:::||::||||||||:::||::|.|..|||||||::||:
 Worm   901 IKVTPSSKIVGDLAQFMVQNNLTRETLVDRADDLSFPKSVVDFMQGNVGQPPYGFPEPLRTKVLR 965

  Fly   989 DMPRIEGRPGAELKDLDFDKLKKELQESH-TCVTNRDVMSAALYPQVTNDFLNFREKYGPVDKLD 1052
            ..|:::||||...|.:|.|.:|.||:|.| ..::..||||.:::|.|.::|..||::|||||||.
 Worm   966 GKPKVDGRPGENAKPVDLDAVKVELEEKHGRTLSEEDVMSYSMFPTVFDEFETFRQQYGPVDKLP 1030

  Fly  1053 TRIFLTGPKVGEEFDVPLERGKTLSVKALAVSADLKPNGIREVFFELNGQLRAVHILDKEAVKEI 1117
            ||:||||.::.||.||.:|.||||:::.|| ...|...|.|||||:||||:|::.::||||.|||
 Worm  1031 TRLFLTGLEIAEEVDVEIESGKTLAIQLLA-EGKLNKRGEREVFFDLNGQMRSIFVVDKEASKEI 1094

  Fly  1118 HVHPKANKSNKSEVGAPMPGTVIDIRVKVGDKVEKGQPLVVLSAMKMEMVVQSPLAGVVKKLEIA 1182
            ...|:|....:..:||||||.|:::::|.||||.|.|||.||||||||||:.||:||.||.:...
 Worm  1095 VTRPRALPGVRGHIGAPMPGDVLELKIKEGDKVTKKQPLFVLSAMKMEMVIDSPIAGTVKAIHAP 1159

  Fly  1183 NGTKLEGEDLIMIIE 1197
            .|||....||::.:|
 Worm  1160 QGTKCSAGDLVVEVE 1174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PCBNP_001163103.1 CPSase_L_chain 39..147 CDD:278706 72/107 (67%)
pyruv_carbox 41..1197 CDD:130302 784/1156 (68%)
ATP-grasp_4 153..360 CDD:302634 154/206 (75%)
Biotin_carb_C 377..484 CDD:214878 76/106 (72%)
DRE_TIM_PC_TC_5S 584..867 CDD:163675 219/282 (78%)
PYC_OADA 880..1078 CDD:280576 123/198 (62%)
biotinyl_domain 1130..1196 CDD:133459 37/65 (57%)
pyc-1NP_001369995.1 PRK12999 28..1175 CDD:237263 785/1164 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166787
Domainoid 1 1.000 441 1.000 Domainoid score I277
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5422
Inparanoid 1 1.050 1593 1.000 Inparanoid score I38
Isobase 1 0.950 - 0 Normalized mean entropy S286
OMA 1 1.010 - - QHG63046
OrthoDB 1 1.010 - - D130620at33208
OrthoFinder 1 1.000 - - FOG0004118
OrthoInspector 1 1.000 - - oto18840
orthoMCL 1 0.900 - - OOG6_101725
Panther 1 1.100 - - LDO PTHR43778
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1045
SonicParanoid 1 1.000 - - X2859
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.890

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