DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PCB and Pcca

DIOPT Version :10

Sequence 1:NP_724841.1 Gene:PCB / 36020 FlyBaseID:FBgn0027580 Length:1197 Species:Drosophila melanogaster
Sequence 2:NP_659093.2 Gene:Pcca / 110821 MGIID:97499 Length:724 Species:Mus musculus


Alignment Length:559 Identity:233/559 - (41%)
Similarity:329/559 - (58%) Gaps:31/559 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 SKVEYKP----IRSVLVANRGEIAIRVFRACTELGIKSVAVYSEQDKMHMHRQKADESYIVGKGL 92
            |.|||:|    ...:|:|||||||.||.:.|.::|||:||::|:.|...:|.:.|||:..||.. 
Mouse    48 SSVEYEPKEKTFDKILIANRGEIACRVIKTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPA- 111

  Fly    93 PPVEAYLNIPELIRVCKENDVDAVHPGYGFLSERSDFAQAVIDAGLRFIGPSPEVVQKMGDKVAA 157
            |..::|||:..::...|:....|||||||||||..:||:.:....:.||||....:|.||||:.:
Mouse   112 PTSKSYLNMDAIMEAIKKTRAQAVHPGYGFLSENKEFAKRLAAEDVTFIGPDTHAIQAMGDKIES 176

  Fly   158 RVAAIEAGVPIVPGTDGPVTTKEEALEFCKKHGLPVIFKAAYGGGGRGMRVVRKMEDVEESFQRA 222
            ::.|..|.|..:||.||.|...:||:...::.|.||:.||:.||||:|||:....|:..:.|:.:
Mouse   177 KLLAKRAKVNTIPGFDGVVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRFS 241

  Fly   223 SSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPRLPI 287
            |.||.::||:..:.|||||:.|||||:|:||||.||.:.|.||:||:|||:|||||.||:..|..
Mouse   242 SQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQKVVEEAPSIFLDP 306

  Fly   288 EIRDKMTEAAVRLARHVGYENAGTVEFLCDESGNFYFIEVNARLQVEHTVTEEITGIDLVQSQIR 352
            |.|..|.|.||.||:.|.|.:|||||||.|...||||:|:|.||||||.|||.|||:||||..|.
Mouse   307 ETRQAMGEQAVALAKAVKYSSAGTVEFLVDSQKNFYFLEMNTRLQVEHPVTECITGLDLVQEMIL 371

  Fly   353 VAEGMTLPELGYTQDKIVPRGYAIQCRVTTEDPANDF-QPNTGRLEVFRSGEGM-GIRLDSASAY 415
            ||:|.   .|.:.|:.|...|:|::|||..|||...| .|:.|||..::....: |:|:|| ...
Mouse   372 VAKGY---PLRHKQEDIPISGWAVECRVYAEDPYKSFGLPSIGRLSQYQEPIHLPGVRVDS-GIQ 432

  Fly   416 AGAIISPYYDSLLVKVISHASDLQSSASKMNRALREFRIRGVKTNIPFLLNVLENQKFLHGVLDT 480
            .|:.||.|||.::.|::::.||...:..:|..||..:.||||..|||.|..|:.|.:|:.|.:.|
Mouse   433 PGSDISIYYDPMISKLVTYGSDRAEALKRMEDALDNYVIRGVTHNIPLLREVIINTRFVKGDIST 497

  Fly   481 YFI-DEHPQLFK-FKPSLNRAQKLLNYMGEVLVNGPQTPLATTLKPALVSPH--VPEVPLDLSPE 541
            .|: |.:|..|| ...:|:...:||.....|.|       |:.|:......|  ||.:..|::  
Mouse   498 KFLSDVYPDGFKGHTLTLSERNQLLAIASSVFV-------ASQLRAQRFQEHSRVPVIRPDVA-- 553

  Fly   542 AIEREERGEAKVTEPPKGLREVLVCEGPEAFAKEVRNRK 580
                  :.|..|....:....|....|| ||..||...|
Mouse   554 ------KWELSVKLHDEDHTVVASNNGP-AFTVEVDGSK 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PCBNP_724841.1 PycA 37..1196 CDD:440660 229/554 (41%)
PccaNP_659093.2 PccA 59..508 CDD:443802 205/453 (45%)
PCC_BT 521..649 CDD:465666 20/81 (25%)
biotinyl_domain 657..723 CDD:133459
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.