DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1671 and wds

DIOPT Version :9

Sequence 1:NP_610526.1 Gene:CG1671 / 36019 FlyBaseID:FBgn0033454 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_001245503.1 Gene:wds / 53428 FlyBaseID:FBgn0040066 Length:361 Species:Drosophila melanogaster


Alignment Length:298 Identity:64/298 - (21%)
Similarity:115/298 - (38%) Gaps:80/298 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   425 HTSTIGCVAMTHNGATGFASVSQDGSMKVWQLVRSKEDRNSYSFNLRYAALSHDKEVNCVAYAPN 489
            ||..:..|..:.|| ...||.|.|..:|:|         .:|..........|...::.||::.:
  Fly    71 HTKAVSAVKFSPNG-EWLASSSADKLIKIW---------GAYDGKFEKTISGHKLGISDVAWSSD 125

  Fly   490 NKLIATASQDKTAKVWLAESNTLQGVLRGHTRGVWSVRFSPVDQIVLTSSSDCTLRIWSISNFSC 554
            ::|:.:.|.|||.|||...:......|:||:..|:...|:|...::::.|.|.::|||.:....|
  Fly   126 SRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 190

  Fly   555 IK------------------------RFDQECTI--------LR------------AEFLDHGKF 575
            :|                        .:|..|.|        |:            .:|..:||:
  Fly   191 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 255

  Fly   576 IISAASDGLLKLWNIKTNTCLQSLDEHNDRVWALAV--SARSNRFFYTGGADSKLIRFGDVTQVT 638
            |::|..|..||||:.....||::...|.:..:.:..  |....::..:|..|:.:.    :..:.
  Fly   256 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVY----IWNLQ 316

  Fly   639 RNEALDKRQ--------------------AALEQEQTL 656
            ..|.:.|.|                    ||||.::|:
  Fly   317 SKEVVQKLQGHTDTVLCTACHPTENIIASAALENDKTI 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1671NP_610526.1 WD40 repeat 22..54 CDD:293791
WD40 64..571 CDD:225201 41/189 (22%)
WD40 repeat 82..115 CDD:293791
WD40 118..455 CDD:238121 10/29 (34%)
WD40 repeat 122..159 CDD:293791
WD40 repeat 167..206 CDD:293791
WD40 repeat 209..236 CDD:293791
WD40 repeat 299..335 CDD:293791
WD40 329..631 CDD:238121 56/251 (22%)
WD40 repeat 340..377 CDD:293791
WD40 repeat 430..476 CDD:293791 10/45 (22%)
WD40 repeat 481..517 CDD:293791 10/35 (29%)
WD40 repeat 524..559 CDD:293791 9/58 (16%)
WD40 repeat 564..600 CDD:293791 14/55 (25%)
WD40 repeat 608..657 CDD:293791 11/71 (15%)
Utp13 653..787 CDD:285789 1/4 (25%)
wdsNP_001245503.1 WD40 64..358 CDD:238121 64/298 (21%)
WD40 repeat 75..112 CDD:293791 10/46 (22%)
WD40 repeat 118..154 CDD:293791 11/35 (31%)
WD40 repeat 159..195 CDD:293791 10/35 (29%)
WD40 repeat 202..237 CDD:293791 4/34 (12%)
WD40 repeat 244..280 CDD:293791 12/35 (34%)
WD40 repeat 288..325 CDD:293791 5/40 (13%)
WD40 repeat 331..357 CDD:293791 5/24 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1422
SonicParanoid 00.000 Not matched by this tool.
21.940

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