DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prosalpha7 and psmb3

DIOPT Version :9

Sequence 1:NP_724834.1 Gene:Prosalpha7 / 36018 FlyBaseID:FBgn0023175 Length:253 Species:Drosophila melanogaster
Sequence 2:NP_001123295.1 Gene:psmb3 / 573095 ZFINID:ZDB-GENE-040426-2682 Length:205 Species:Danio rerio


Alignment Length:218 Identity:48/218 - (22%)
Similarity:90/218 - (41%) Gaps:38/218 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 GTVIGIRGKDAVVLAVEKI--ITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAA 97
            |.|:.:|||:.|.:|.::.  |.::|...|. .:||.:.:.:.:.:|||..|...|:...:....
Zfish     9 GAVMAMRGKECVAIASDRRFGIQAQLVTTDF-QKIFPMGERLYIGLAGLATDVQTVSQRLKFRLN 72

  Fly    98 NYRQQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFG---LSIILASWDEVEGPQLYKIEPSGSSF 159
            .|..:..:.|..:.....|:..::.       |.||   :..::|..|    |:.:  ||...|.
Zfish    73 LYELKEGRQIKPRTFMSMVSNLLYE-------RRFGPYYIEPVIAGLD----PKTF--EPFICSL 124

  Fly   160 GYFAC--------ASGKAKQLAKTEMEKL-KMDMRTDELVESAGEIIYKVHDELKDKDFRFEMGL 215
            ....|        .||...:......|.| :.||:.::|.|:..:.:...    .|:|....||:
Zfish   125 DLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMKPEDLFETISQAMLNA----VDRDAVSGMGV 185

  Fly   216 VGRVTGGLHLINPSELTEKARKA 238
            |      :|:|...::|.:..||
Zfish   186 V------VHVIEKDKITTRTLKA 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha7NP_724834.1 proteasome_alpha_type_3 5..216 CDD:239720 42/194 (22%)
PRE1 6..231 CDD:223711 45/209 (22%)
psmb3NP_001123295.1 PRE1 3..198 CDD:223711 46/212 (22%)
proteasome_beta_type_3 6..201 CDD:239728 46/215 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.