DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vamp7 and VAMP4

DIOPT Version :9

Sequence 1:NP_001286255.1 Gene:Vamp7 / 36015 FlyBaseID:FBgn0266186 Length:218 Species:Drosophila melanogaster
Sequence 2:NP_003753.2 Gene:VAMP4 / 8674 HGNCID:12645 Length:141 Species:Homo sapiens


Alignment Length:82 Identity:32/82 - (39%)
Similarity:55/82 - (67%) Gaps:0/82 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 DTISRVHGQIDELKDIMVKNIDSLRDRGEKLELLVNKTENLSNNSVAFRKASRNLARQMFWKNIR 188
            |.|..|..|:||:.|:|.:||..:.:|||:|:.|.:|:|:||:|:.||...|:.|.|||:|:..:
Human    51 DKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCK 115

  Fly   189 VYVVVGLVITFIVYVIV 205
            :..::.||...::.||:
Human   116 IKAIMALVAAILLLVII 132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vamp7NP_001286255.1 Longin 32..97 CDD:290490
Synaptobrevin 122..210 CDD:279324 32/82 (39%)
R-SNARE_VAMP7 124..188 CDD:277224 28/63 (44%)
VAMP4NP_003753.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..51 32/82 (39%)
R-SNARE_VAMP4 50..116 CDD:277222 28/64 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5143
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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