DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vamp7 and SNC2

DIOPT Version :9

Sequence 1:NP_001286255.1 Gene:Vamp7 / 36015 FlyBaseID:FBgn0266186 Length:218 Species:Drosophila melanogaster
Sequence 2:NP_014972.3 Gene:SNC2 / 854505 SGDID:S000005854 Length:115 Species:Saccharomyces cerevisiae


Alignment Length:74 Identity:22/74 - (29%)
Similarity:50/74 - (67%) Gaps:0/74 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 QIDELKDIMVKNIDSLRDRGEKLELLVNKTENLSNNSVAFRKASRNLARQMFWKNIRVYVVVGLV 196
            :||:...||..||:.:.:|||:|..:.:|.:||:.::..|::.:..:.:||:||::::.:.:.||
Yeast    34 EIDDTVGIMRDNINKVAERGERLTSIEDKADNLAISAQGFKRGANRVRKQMWWKDLKMRMCLFLV 98

  Fly   197 ITFIVYVIV 205
            :..::.||:
Yeast    99 VIILLVVII 107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vamp7NP_001286255.1 Longin 32..97 CDD:290490
Synaptobrevin 122..210 CDD:279324 22/74 (30%)
R-SNARE_VAMP7 124..188 CDD:277224 18/55 (33%)
SNC2NP_014972.3 SNC1 <1..96 CDD:227472 18/61 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5143
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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