DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vamp7 and vamp3

DIOPT Version :9

Sequence 1:NP_001286255.1 Gene:Vamp7 / 36015 FlyBaseID:FBgn0266186 Length:218 Species:Drosophila melanogaster
Sequence 2:NP_001016972.1 Gene:vamp3 / 549726 XenbaseID:XB-GENE-1014996 Length:101 Species:Xenopus tropicalis


Alignment Length:81 Identity:22/81 - (27%)
Similarity:49/81 - (60%) Gaps:1/81 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 ISRVHGQIDELKDIMVKNIDSLRDRGEKLELLVNKTENLSNNSVAFRKASRNLARQMFWKNIRVY 190
            :.:...|::|:.|||..|:|.:.:|.:||..|.::.:.|...:..|..::..|.|:.:|||.:::
 Frog    17 LQQTQAQVNEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMW 81

  Fly   191 -VVVGLVITFIVYVIV 205
             :::.:|:..|:.:||
 Frog    82 AILIAVVVVLIIIIIV 97

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vamp7NP_001286255.1 Longin 32..97 CDD:290490
Synaptobrevin 122..210 CDD:279324 22/81 (27%)
R-SNARE_VAMP7 124..188 CDD:277224 18/61 (30%)
vamp3NP_001016972.1 R-SNARE_VAMP2 15..77 CDD:277223 16/59 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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