DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vamp7 and vamp1a

DIOPT Version :10

Sequence 1:NP_610524.1 Gene:Vamp7 / 36015 FlyBaseID:FBgn0266186 Length:218 Species:Drosophila melanogaster
Sequence 2:NP_998563.1 Gene:vamp1a / 406707 ZFINID:ZDB-GENE-040426-2725 Length:119 Species:Danio rerio


Alignment Length:83 Identity:21/83 - (25%)
Similarity:47/83 - (56%) Gaps:6/83 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 ISRVHGQIDELKDIMVKNIDSLRDRGEKLELLVNKTENLSNNSVAFRKASRNLARQMFWKNIRVY 190
            :.:...|:||:.|||..|:|.:.:|.:||..|.::.:.|...:..|..::..|..:.:|||:::.
Zfish    35 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKNKYWWKNMKMM 99

  Fly   191 VVVGLV------ITFIVY 202
            :::|::      |.|:.:
Zfish   100 IIMGIMGIILLGIAFMYF 117

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vamp7NP_610524.1 Longin 4..117 CDD:341428
R-SNARE_VAMP7 124..188 CDD:277224 18/61 (30%)
vamp1aNP_998563.1 R-SNARE_VAMP2 33..95 CDD:277223 16/59 (27%)
Blue background indicates that the domain is not in the aligned region.

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