DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vamp7 and Ykt6

DIOPT Version :10

Sequence 1:NP_610524.1 Gene:Vamp7 / 36015 FlyBaseID:FBgn0266186 Length:218 Species:Drosophila melanogaster
Sequence 2:NP_572423.1 Gene:Ykt6 / 31706 FlyBaseID:FBgn0260858 Length:199 Species:Drosophila melanogaster


Alignment Length:131 Identity:35/131 - (26%)
Similarity:63/131 - (48%) Gaps:9/131 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 YLIH-YTCENKLVYMCITDNEFERSRAFLFLADIKQKFIQTYGLQVATAIAYSMNTEFS---KIL 110
            |:.| |...:.|..:.|.|:|:....|...:..|...|...     .:|..:...||.:   .:|
  Fly    65 YMCHVYVRADNLAGVLIADHEYPHRVAHTLITKILDDFTAK-----VSADQWPNGTEATISFDLL 124

  Fly   111 AQQMVYFSQSREVDTISRVHGQIDELKDIMVKNIDSLRDRGEKLELLVNKTENLSNNSVAFRKAS 175
            ...:..:....|.|.::::...:||.|.|:...|:::.:|||||:.:|:|:|.||..|.||.|.:
  Fly   125 PAFLARYQNPVEADPLTKMQNDLDETKIILKNTIEAVLERGEKLDDMVSKSEKLSLQSKAFYKTA 189

  Fly   176 R 176
            :
  Fly   190 K 190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vamp7NP_610524.1 Longin 4..117 CDD:341428 14/70 (20%)
R-SNARE_VAMP7 124..188 CDD:277224 20/53 (38%)
Ykt6NP_572423.1 SNC1 4..196 CDD:227472 35/131 (27%)

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