DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vamp7 and Vamp3

DIOPT Version :9

Sequence 1:NP_001286255.1 Gene:Vamp7 / 36015 FlyBaseID:FBgn0266186 Length:218 Species:Drosophila melanogaster
Sequence 2:NP_033524.1 Gene:Vamp3 / 22319 MGIID:1321389 Length:103 Species:Mus musculus


Alignment Length:84 Identity:23/84 - (27%)
Similarity:49/84 - (58%) Gaps:1/84 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 ISRVHGQIDELKDIMVKNIDSLRDRGEKLELLVNKTENLSNNSVAFRKASRNLARQMFWKNIRVY 190
            :.:...|:||:.|||..|:|.:.:|.:||..|.::.:.|...:..|..::..|.|:.:|||.:::
Mouse    19 LQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMW 83

  Fly   191 VVVGLVITFIVYVIVSMAC 209
             .:|:.:..|:.:|:.:.|
Mouse    84 -AIGISVLVIIVIIIIVWC 101

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vamp7NP_001286255.1 Longin 32..97 CDD:290490
Synaptobrevin 122..210 CDD:279324 23/84 (27%)
R-SNARE_VAMP7 124..188 CDD:277224 19/61 (31%)
Vamp3NP_033524.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25 0/5 (0%)
R-SNARE_VAMP2 17..79 CDD:277223 17/59 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5143
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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