DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vamp7 and vamp-8

DIOPT Version :9

Sequence 1:NP_001286255.1 Gene:Vamp7 / 36015 FlyBaseID:FBgn0266186 Length:218 Species:Drosophila melanogaster
Sequence 2:NP_001040904.1 Gene:vamp-8 / 178349 WormBaseID:WBGene00007200 Length:116 Species:Caenorhabditis elegans


Alignment Length:98 Identity:25/98 - (25%)
Similarity:56/98 - (57%) Gaps:3/98 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 REVDTISRVHGQIDELKDIMVKNIDSLRDRGEKLELLVNKTENLSNNSVAFRKASRNLARQMFWK 185
            ::.:.:..:..|:|.:|.:||.|::.:.:|||:|:.:..::|.|:..|..|:..:|.:.|:....
 Worm    16 QQKEKMQNLRNQVDSVKAVMVDNVERILERGERLDNIERRSEQLNATSANFKFTARKVQRKFCML 80

  Fly   186 NIRVYVVVGLVITFIVYVIVSMACGGLAWQSCV 218
            |.:..|::.:|| .||:|::.:..  |.|...:
 Worm    81 NAKWTVILSIVI-LIVFVVLLLLI--LHWTGVI 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vamp7NP_001286255.1 Longin 32..97 CDD:290490
Synaptobrevin 122..210 CDD:279324 23/87 (26%)
R-SNARE_VAMP7 124..188 CDD:277224 17/63 (27%)
vamp-8NP_001040904.1 Synaptobrevin 17..>88 CDD:366387 18/70 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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