DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lsm11 and LSM11

DIOPT Version :9

Sequence 1:NP_610522.1 Gene:Lsm11 / 36013 FlyBaseID:FBgn0033450 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_775762.1 Gene:LSM11 / 134353 HGNCID:30860 Length:360 Species:Homo sapiens


Alignment Length:378 Identity:90/378 - (23%)
Similarity:126/378 - (33%) Gaps:146/378 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MESRDRKTSNEDDSSEI----SELDVGSDRFNPLRALYEPNFRVTDAVPKVIY------QNLAAF 55
            ||.|:|...:....|..    ..|||.||.|:||.|||.|.      :|.:.|      .|:|.:
Human     1 MEERERGARSAGAGSPARPPSPRLDVSSDSFDPLLALYAPR------LPPIPYPNAPCFNNVAEY 59

  Fly    56 ESALKKFGI--WQLNKRQKPGSAEG-------GDQGTSKKASTSEAVDILPPERRFEPHQMPTTS 111
            ||.|:. |:  ....:.:..|:|.|       |..|.:::...:.|.|   |||.....::....
Human    60 ESFLRT-GVRGGGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPD---PERIQRLRRLMVAK 120

  Fly   112 SR---------------KKHHRNIFTYMEAAVG-PLELLTKCISPASHNESNERRRVRVVIRKHG 160
            ..               :|..||:.|.|....| ||..|.:||        .|..:|.|.||...
Human   121 EEGDGAAGAGRRGPGRSRKAPRNVLTRMPLHEGSPLGELHRCI--------REGVKVNVHIRTFK 177

  Fly   161 SVGGSVEGELLAFDKQWNLLLRNVTETWKRRKYNYGEQNICDTPVDCT---GRLK---------- 212
            .:.|...|.|:||||.||:.|.:|.||:  ||...|:....|:.:..|   .|||          
Human   178 GLRGVCTGFLVAFDKFWNMALTDVDETY--RKPVLGKAYERDSSLTLTRLFDRLKLQDSSKKEAD 240

  Fly   213 ----------------------------------------------------------------- 212
                                                                             
Human   241 SKSAVEDSTLSRYSQTSTWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGRTTRTD 305

  Fly   213 --ELGITLPR--TVVKNLNRKNVE---------IRRELPQILIRGENVVLVSL 252
              .:|.|..|  |:.:..:||...         ..|.:.||.||||||:||.|
Human   306 GSSVGGTFSRATTLSRGQSRKKKRKPKVDYQQVFTRHINQIFIRGENVLLVHL 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsm11NP_610522.1 LSm11_M <158..204 CDD:212485 17/45 (38%)
Sm_like <166..252 CDD:294186 37/176 (21%)
LSM11NP_775762.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..29 8/27 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 68..143 11/77 (14%)
LSm11_M 159..224 CDD:212485 25/74 (34%)
SM 1 171..204 14/32 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 268..333 6/64 (9%)
SM 2 343..356 8/12 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165157358
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2CMUN
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 56 1.000 Inparanoid score I5432
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1605022at2759
OrthoFinder 1 1.000 - - FOG0008244
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_107358
Panther 1 1.100 - - LDO PTHR21415
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4857
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1110.790

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