DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lsm11 and lsm11

DIOPT Version :9

Sequence 1:NP_610522.1 Gene:Lsm11 / 36013 FlyBaseID:FBgn0033450 Length:256 Species:Drosophila melanogaster
Sequence 2:XP_031754540.1 Gene:lsm11 / 100492392 XenbaseID:XB-GENE-1007644 Length:313 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsm11NP_610522.1 LSm11_M <158..204 CDD:212485
Sm_like <166..252 CDD:294186
lsm11XP_031754540.1 LSm11_M 147..212 CDD:212485
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 71 1.000 Inparanoid score I5144
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1605022at2759
OrthoFinder 1 1.000 - - FOG0008244
OrthoInspector 1 1.000 - - oto102863
Panther 1 1.100 - - LDO PTHR21415
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.160

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