DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1698 and slc6a4b

DIOPT Version :9

Sequence 1:NP_001260835.1 Gene:CG1698 / 36006 FlyBaseID:FBgn0033443 Length:654 Species:Drosophila melanogaster
Sequence 2:NP_001170930.1 Gene:slc6a4b / 664770 ZFINID:ZDB-GENE-060314-2 Length:591 Species:Danio rerio


Alignment Length:548 Identity:189/548 - (34%)
Similarity:315/548 - (57%) Gaps:22/548 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 KKTLSEGSGSAPPP----GHGDSPSGVEAGQPGKKRDSWNNDIEFLMSCIALSVGLGNVWRFPFT 103
            ::.::.|:..||.|    |:..:|  |......:.||.|:..::||:|.|..:|.||||||||:.
Zfish     5 EQVIAHGNLCAPGPPNNAGYNSNP--VPVIIQTESRDKWSKKMDFLLSVIGFAVDLGNVWRFPYI 67

  Fly   104 ALENGGGAFVIPYLIVLILVGKPVYYLEMLLGQFSSRGSVKVY-DFSPIMRGIGYGQVLATGIVT 167
            ..:||||||:|||:::.:..|.|::|:|:.||||...|::.:: ...||.:|||:...:....|:
Zfish    68 CYQNGGGAFLIPYVLMAVFGGVPLFYMELALGQFHRTGAISIWKHICPIFKGIGFAICIIALYVS 132

  Fly   168 TYYATLMALTLRYFVDSFYPTLPWSYCREEWGTE-CLDSGPQEASRATSLAGSGVRTTSAEFYFT 231
            .||.|::|..|.||..||..||||:.|..:|.|| |.:...::....|:.:    |:.:.|||..
Zfish   133 FYYNTIIAWALFYFYSSFSSTLPWTSCDNDWNTENCTNYFGKDNVTWTNYS----RSPAEEFYTR 193

  Fly   232 NIILREKASIDDGIGYPSWSLALALAVAWIVIAGIMFKGVKSSGKASYFLALFPYVVMLVLLVRA 296
            |::...::|....:||..|.|.|.|.:.:.::...::||||:|||..:..|..||||:|:|::|.
Zfish   194 NVLAVHESSGLGNVGYIRWQLMLCLFLIFTIVYFSLWKGVKTSGKVVWVTATLPYVVLLILMIRG 258

  Fly   297 LTLPGAFDGVLYFLRPQWHKLLEPQVWYAAVTQVFFSLAICFGNIIMYASYNRFGHNIYRDANIV 361
            .|||||:.||:::|.|:|.||.|..||..|..|:||||...||.::..:|||.|.:|.||||.:.
Zfish   259 ATLPGAWKGVVFYLNPKWEKLKETSVWVDAAAQIFFSLGPGFGVLLALSSYNPFTNNCYRDAIVT 323

  Fly   362 TTLDTFTSLLSGVIIFGILGNLAYENNTT--DIASVVNGGPGLAFISYPDAIAKFKWLPQLFSVL 424
            :.::..||.:||.:||.:||.:|.:.|..  |:|.  :.||.|.||:||:|||.... ...|:::
Zfish   324 SLVNCLTSFVSGFVIFTVLGYMAEQRNVNVEDVAR--DKGPSLLFITYPEAIANMVG-STFFAII 385

  Fly   425 FFLMLFVLGIGSNVGMASCMSTVIKDQF----GHLKNWTVVVGIAIVGYFLGLLYITPGGQFLLN 485
            ||:|:..||:.|..|....:.|.:.|::    .|.:. ..|:|:.:|.:...|..:|.||.:::.
Zfish   386 FFVMMITLGLDSTFGGLEAIITAVMDEYPDVLSHRRE-LFVLGLVVVCFLGSLSTLTKGGAYVVK 449

  Fly   486 LVDYFGVTFVALVLAIFELVTIAWIYGVKRLCRDVEFMIGIKTSLYYRICWAVVTPLLMLTILIY 550
            |::.|||....:.:...|...::|.||:.|...|::.|:|....|::::||..::|..:..|:|.
Zfish   450 LLEEFGVGSSIIAIVFLEATAVSWFYGINRFSNDIKSMLGYTPGLFWKVCWVAISPAFLAYIIIS 514

  Fly   551 TLVLYEPLKYKDYTYQSGVYVFGWCLSA 578
            :|:..:.|...||.:.......|:.:.|
Zfish   515 SLLNPQTLTLFDYEFPDWSITVGYIIGA 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1698NP_001260835.1 SLC6sbd 75..552 CDD:271359 175/484 (36%)
slc6a4bNP_001170930.1 SLC6sbd_SERT 38..574 CDD:271399 182/513 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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